Subcellular localization of GFP-hCASK and GFP-hCASK mutants in HEK-393 cells.

<p>Images were obtained with a 63X Plan-apochromat 1.4 N.A oil lens. White arrows indicate representative intracellular aggregates. Insert shows higher magnification.</p

Domain location and conservation of five CASK mutations.

<p><i>A.</i> Five CASK XLMR mutations are shown in reference to CASK’s domain structure. <i>B.</i> A comparison of the five mutation sites in CASK orthologs from nine species. Conserved residues, white. Residues identical to the mutation, black. Residues that differ from the wild-type and mutant hCASK sequence are gradiently shaded to indicate their similarity to the native hCASK residue.</p

Characterization of aggregates.

<p>Images of HEK cells transfected with <i>A)</i> GFP-CASK-Y728C or <i>B)</i> GFP-CASK-W919R were obtained with a 63X Plan-apochromat 1.4 N.A oil lens. First column shows aggregated GFP-CASK protein. Panels labeled “mCherry” show cells that were co-transfected with GFP-CASK and mCherry, which remains cytosolic. Panels labeled “Thioflavin T” represent coverslips that were fixed and then stained with Thioflavin T, which shows enhanced fluorescence in the presence of amyloid fibrils. Panels labeled “Golgi-RFP” represent coverslips that were treated with CellLight® Golgi-RFP which labels the Golgi network. Third column shows an overlay, demonstrating that aggregates are cytosolic (mCherry, Golgi-RFP) but not amyloid in nature (Thioflavin T).</p

Predicted impact of mutations (structure-based).

<p>For mutations in CaMK domain (R28L and Y268H), the structure 3c0i.pdb was used. For mutations in the SH3-GuK domain (Y728C and W919R), the homology model based on 1 kgd.pdb and 1 kjw.pdb was used. Positive ΔΔG values suggest that the indicated mutation destabilizes CASK’s overall fold.</p

Functional CASK XLMR mutations (R28L, Y268H and P396S) do not disrupt interactions with liprin-α, Mint-1, or Veli.

<p>Lysates from HEK-293 cells co-transfected with GFP-CASK (wild-type or mutants R28L, Y268H, or P396S) and either liprin-α3 or FLAG-tagged Mint-1 were incubated with anti-GFP beads to pull down GFP-CASK and binding partners. To assess Veli interaction, no co-transfection was performed; native Veli was pulled down after incubation of lysates from GFP-CASK-transfected HEK-293 cells with anti-GFP beads to pull down GFP-CASK. Western blots of samples containing whole cell lysate (Input) or immunoprecipitates (Co-IP) were probed with anti-liprin-α3, anti-Veli, or anti-FLAG primary antibodies.</p

Structural modeling of four CASK mutations.

<p>Dotted lines indicate contacts. <i>A.</i> CAMK domain of CASK (3c0i.pdb) showing R28 and Y268. <i>B.</i> Native (Arg, cyan) and mutant (Leu, magenta) side-chains at position 28. <i>C.</i> Native (Tyr, cyan) and mutant (His, magenta) side-chains at position 268. <i>D.</i> SH3-GuK domain homology model showing Y728 and W919. SH3 region, yellow. GuK region, pink. <i>E.</i> Native (Tyr, cyan) and mutant (Cys, magenta) side-chains at position 728. <i>F.</i> Native (Trp, cyan) and mutant (Arg, magenta) side-chains at position 919.</p

Glycerol treatment eliminates intracellular aggregates.

<p>Six hours after transfection, media was exchanged for either fresh media alone or containing 10% glycerol. <i>A.</i> Images, 40X. Insert shows higher magnification. <i>B.</i> Using five representative 20X images (<a href="http://www.plosone.org/article/info:doi/10.1371/journal.pone.0088276#pone.0088276.s007" target="_blank">Figure S7</a>) for each condition, individual cells were classified as free of or containing aggregates in Image J. Bars and error bars represent the average and standard deviation of three independent analyses. * and # indicate statistically significant differences from the wild-type images.</p

Ultrastructural analysis revealed a low abundance of mitochondria at presynaptic terminals.

<p>A) Mixed cortical cultures were fixed on the 14^th DIV. The cultures were prepared for electron microscopy as described in the materials and methods section. Two representative micrographs used for analyzing the distribution of mitochondria are depicted. Black arrows point to the presynaptic terminals with synaptic vesicles, red arrow head indicates the mitochondria observed at these nerve terminals. B) Serial block face scanning electron microscopy or SBFSEM analysis from hippocampi of P15 wild-type mice. Left panel depicts a representative 2D ultramicrograph from the dataset (scale bar = 1000 nm); right panel depicts 3D reconstruction of 10 presynaptic terminals. Only four out of 10 presynaptic terminals showed discernible mitochondria. C) Histograms showing quantitation from 112 micrographs obtained from thin section TEM analyzed using the Image J program and from 173 reconstructed presynaptic terminals obtained by SBFSEM and analyzed using the TRAKEM2 software.</p

Additional file 1: Figure S1. of X-linked intellectual disability gene CASK regulates postnatal brain growth in a non-cell autonomous manner

Description of mouse lines used and effect of cre expression on floxed CASK gene. Figure S2. CASK deletion from neurons and characterization of female heterozygous mice with neuronspecific CASK deletion. Figure S3. CASK deletion from neurons does not affect cerebellum. Figure S4. Generation of CASK(+/-) heterozygous mutant mice. Figure S5. External granular layer of cerebellum is normal during development of CASK(+/-) heterozygous mutant mice. Figure S6. Characterization of CASK(+/-) heterozygous mutant mice. Figure S7. Schematic diagram depicting cell autonomous and non-cell autonomous reduction in cell numbersas possible cause of microcephaly. Figure S8. Table showing the nucleotide sequences of CASK shRNA used in the study. Figure S9. CASK knockdown using shRNA 690 reduces cellular respiration and proliferation. (PDF 73672 kb

Presynaptic mitochondria are relatively small in volume compared to somatic mitochondria.

<p>A) Representative 2D image from the SBFSEM dataset showing extrasynaptic mitochondria in blue and presynaptic mitochondria in green. B) 3D reconstructions of presynaptic and extrasynaptic mitochondria using TRAKEM2 software. Scale bar = 1000 nm. C) Bar graph depicting the volume of extrasynaptic and presynaptic mitochondria. Data are plotted as mean ± SEM. n = 3 different sets.</p