Periodic formation of FeSi bands in diffusion couples Fe (15 wt.% Si) - Zn

During the reaction in Fe(15 wt.% Si)-Zn diffusion couples at temperatures between 623 and 723 K thin regularly spaced parallel bands containing very small FeSi precipitates are observed throughout the 6 and ~ reaction layers. The periodic nature of this effect is strongly reminiscent of the well-known Liesegang phenomenon. A detailed analysis of our results with respect to the principles underlying the Liesegang mechanism, however, shows that such a mechanism cannot explain the observed phenomenon in our case. A more probable explanation is found in the action of shear and tenSile stresses in the diffusion couple which lead to a periodic release ofthe continuously formed FeSi precipitates from the Fe(15 wt.% Si) substrate. Preliminary results obtained with substrates of varying thicknesses are strongly in favour of the latter explanation

Mode Shift to Arlanda Airport for Sustainable Development

For the past 20 years, the GPCRDB (G protein-coupled receptors database; http://www.gpcr.org/7tm/) has been a 'one-stop shop' for G protein-coupled receptor (GPCR)-related data. The GPCRDB contains experimental data on sequences, ligand-binding constants, mutations and oligomers, as well as many different types of computationally derived data, such as multiple sequence alignments and homology models. The GPCRDB also provides visualization and analysis tools, plus a number of query systems. In the latest GPCRDB release, all multiple sequence alignments, and >65,000 homology models, have been significantly improved, thanks to a recent flurry of GPCR X-ray structure data. Tools were introduced to browse X-ray structures, compare binding sites, profile similar receptors and generate amino acid conservation statistics. Snake plots and helix box diagrams can now be custom coloured (e.g. by chemical properties or mutation data) and saved as figures. A series of sequence alignment visualization tools has been added, and sequence alignments can now be created for subsets of sequences and sequence positions, and alignment statistics can be produced for any of these subsets

Integrating GPCR-specific information with full text articles

Contains fulltext : 91939.pdf (publisher's version ) (Open Access)10 p

WIWS: a protein structure bioinformatics Web service collection

The WHAT IF molecular-modelling and drug design program is widely distributed in the world of protein structure bioinformatics. Although originally designed as an interactive application, its highly modular design and inbuilt control language have recently enabled its deployment as a collection of programmatically accessible web services. We report here a collection of WHAT IF-based protein structure bioinformatics web services: these relate to structure quality, the use of symmetry in crystal structures, structure correction and optimization, adding hydrogens and optimizing hydrogen bonds and a series of geometric calculations. The freely accessible web services are based on the industry standard WS-I profile and the EMBRACE technical guidelines, and are available via both REST and SOAP paradigms. The web services run on a dedicated computational cluster; their function and availability is monitored daily

Slip-stick excitation and travelling waves excite silo honking

© The Authors, published by EDP Sciences, 2017. Silo honking is the harmonic sound generated by the discharge of a silo filled with a granular material. In industrial storage silos, the acoustic emission during discharge of PET-particles forms a nuisance for the environment and may ultimately result in structural failure. This work investigates the phenomenon experimentally using a laboratory-scale silo, and successfully correlates the frequency of the emitted sound with the periodicity of the mechanical motion of the grains. The key driver is the slip-stick interaction between the wall and the particles, characterized as a wave moving upwards through the silo. A quantitative correlation is established for the first time between the frequency of the sound, measured with an electret microphone, and the slip-frequency, measured with a high-speed camera. In the lower regions of the tube, both the slip-stick motion and the honking sound disappear.Royal Society, IMA summer internship fun

GPCR-OKB: the G protein coupled receptor oligomer knowledge base

Rapid expansion of available data about G Protein Coupled Receptor (GPCR) dimers/oligomers over the past few years requires an effective system to organize this information electronically. Based on an ontology derived from a community dialog involving colleagues using experimental and computational methodologies, we developed the GPCR-Oligomerization Knowledge Base (GPCR-OKB). GPCR-OKB is a system that supports browsing and searching for GPCR oligomer data. Such data were manually derived from the literature. While focused on GPCR oligomers, GPCR-OKB is seamlessly connected to GPCRDB, facilitating the correlation of information about GPCR protomers and oligomers

Target and (Astro-)WISE technologies - Data federations and its applications

After its first implementation in 2003 the Astro-WISE technology has been rolled out in several European countries and is used for the production of the KiDS survey data. In the multi-disciplinary Target initiative this technology, nicknamed WISE technology, has been further applied to a large number of projects. Here, we highlight the data handling of other astronomical applications, such as VLT-MUSE and LOFAR, together with some non-astronomical applications such as the medical projects Lifelines and GLIMPS, the MONK handwritten text recognition system, and business applications, by amongst others, the Target Holding. We describe some of the most important lessons learned and describe the application of the data-centric WISE type of approach to the Science Ground Segment of the Euclid satellite.Comment: 9 pages, 5 figures, Proceedngs IAU Symposium No 325 Astroinformatics 201

Merging Grid Technologies

This paper reports the integration of the astronomical Grid solution realised in the Astro-WISE information system with the EGEE Grid and the porting of Astro-WISE applications on EGEE. We review the architecture of the Astro-WISE Grid, define the problems for the integration of the Grid infrastructures and our solution to these problems. We give examples of applications running on Astro-WISE and EGEE and review future development of the merged system