Single Cell Transfection with Single Molecule Resolution Using a Synthetic Nanopore

We report the development of a single cell gene delivery system based on electroporation using a synthetic nanopore, that is not only highly specific and very efficient but also transfects with single molecule resolution at low voltage (1 V) with minimal perturbation to the cell. Such a system can be used to control gene expression with unprecedented precisionno other method offers such capabilities

Direct Visualization of Single-Molecule Translocations through Synthetic Nanopores Comparable in Size to a Molecule

A nanopore is the ultimate analytical tool. It can be used to detect DNA, RNA, oligonucleotides, and proteins with submolecular sensitivity. This extreme sensitivity is derived from the electric signal associated with the occlusion that develops during the translocation of the analyte across a membrane through a pore immersed in electrolyte. A larger occluded volume results in an improvement in the signal-to-noise ratio, and so the pore geometry should be made comparable to the size of the target molecule. However, the pore geometry also affects the electric field, the charge density, the electro-osmotic flow, the capture volume, and the response time. Seeking an optimal pore geometry, we tracked the molecular motion in three dimensions with high resolution, visualizing with confocal microscopy the fluorescence associated with DNA translocating through nanopores with diameters comparable to the double helix, while simultaneously measuring the pore current. Measurements reveal single molecules translocating across the membrane through the pore commensurate with the observation of a current blockade. To explain the motion of the molecule near the pore, finite-element simulations were employed that account for diffusion, electrophoresis, and the electro-osmotic flow. According to this analysis, detection using a nanopore comparable in diameter to the double helix represents a compromise between sensitivity, capture volume, the minimum detectable concentration, and response time

In Vitro Characterization of Surface Properties Through Living Cells

The ability to probe an interface beneath a layer of living cells in situ without the need for labeling and fixation has the potential to unlock some of the key questions in cell biology and biointerfacial phenomena. Here, we show that vibrational sum frequency generation (SFG) spectroscopy can be used to detect alkanethiol self-assembled monolayers (SAMs) buried underneath a layer of living erythrocytes (ECs). SFG spectra with and without ECs showed the spectral signatures typical of these SAMs, indicating that the signal was being generated solely by the SAM and was not influenced by the presence of cells. Direct comparison of infrared spectroscopy to SFG measurements of cells adhered on a fibronectin layer showed that the SFG signal emanated solely from this layer. These results have important implications for the characterization of surfaces in biomedical, environmental, and industrial applications

Biological Noise Abatement: Coordinating the Responses of Autonomous Bacteria in a Synthetic Biofilm to a Fluctuating Environment Using a Stochastic Bistable Switch

Noise is inherent to single cell behavior. Its origins can be traced to the stochasticity associated with a few copies of genes and low concentrations of protein and ligands. We have studied the mechanisms by which the response of noisy elements can be entrained for biological signal processing. To elicit predictable biological function, we have engineered a gene environment that incorporates a gene regulatory network with the stringently controlled microenvironment found in a synthetic biofilm. The regulatory network leverages the positive feedback found in quorum-sensing regulatory components of the <i>lux</i> operon, which is used to coordinate cellular responses to environmental fluctuations. Accumulation of the Lux receptor in cells, resulting from autoregulation, confers a rapid response and enhanced sensitivity to the quorum-sensing molecule that is retained after cell division as epigenetic memory. The memory of the system channels stochastic noise into a coordinated response among quorum-sensing signal receivers in a synthetic biofilm in which the noise diminishes with repeated exposure to noisy transmitters on the input of a signaling cascade integrated into the same biofilm. Thus, gene expression in the receivers, which are autonomous and do not communicate with each other, is synchronized to fluctuations in the environment