Computational modeling of acute myocardial infarction

This is an Accepted Manuscript of an article published by Taylor & Francis Group in Computer Methods in Biomechanics and Biomedical Engineering on October, 2016, available online at: http://www.tandfonline.com/10.1080/10255842.2015.1105965Myocardial infarction, commonly known as heart attack, is caused by reduced blood supply and damages the heart muscle because of a lack of oxygen. Myocardial infarction initiates a cascade of biochemical and mechanical events. In the early stages, cardiomyocytes death, wall thinning, collagen degradation, and ventricular dilation are the immediate consequences of myocardial infarction. In the later stages, collagenous scar formation in the infarcted zone and hypertrophy of the non-infarcted zone are auto-regulatory mechanisms to partly correct for these events. Here we propose a computational model for the short-term adaptation after myocardial infarction using the continuum theory of multiplicative growth. Our model captures the effects of cell death initiating wall thinning, and collagen degradation initiating ventricular dilation. Our simulations agree well with clinical observations in early myocardial infarction. They represent a first step toward simulating the progression of myocardial infarction with the ultimate goal to predict the propensity toward heart failure as a function of infarct intensity, location, and size.Peer ReviewedPostprint (author's final draft

Mechanics reveals the biological trigger in wrinkly fingers

The final publication is available at Springer via http://dx.doi.org/10.1007/s10439-016-1764-6Fingertips wrinkle due to long exposure to water. The biological reason for this morphological change is unclear and still not fully understood. There are two main hypotheses for the underlying mechanism of fingertip wrinkling: the ‘shrink’ model (in which the wrinkling is driven by the contraction of the lower layers of skin, associated with the shrinking of the underlying vasculature), and the ‘swell’ model (in which the wrinkling is driven by the swelling of the upper layers of the skin, associated with osmosis). In reality, contraction of the lower layers of the skin and swelling of the upper layers will happen simultaneously. However, the relative importance of these two mechanisms to drive fingertip wrinkling also remains unclear. Simulating the swelling in the upper layers of skin alone, which is associated with neurological disorders, we found that wrinkles appeared above an increase of volume of ˜10%.˜10%. Therefore, the upper layers can not exceed this swelling level in order to not contradict in vivo observations in patients with such neurological disorders. Simulating the contraction of the lower layers of the skin alone, we found that the volume have to decrease a ˜20%˜20% to observe wrinkles. Furthermore, we found that the combined effect of both mechanisms leads to pronounced wrinkles even at low levels of swelling and contraction when individually they do not. This latter results indicates that the collaborative effect of both hypothesis are needed to induce wrinkles in the fingertips. Our results demonstrate how models from continuum mechanics can be successfully applied to testing hypotheses for the mechanisms that underly fingertip wrinkling, and how these effects can be quantified.Peer ReviewedPostprint (published version

Thermodynamics in the NC disc

We study the thermodynamics of a scalar field on a noncommutative disc implementing the boundary as the limit case of an interaction with an appropriately chosen confining background. We explicitly obtain expressions for thermodynamic potentials of gases of particles obeying different statistics. In order to do that, we derive an asymptotic expansion for the density of the zeros of Laguerre polynomials. As a result we prove that the Bose-Einstein condensation in the noncommutative disc does not take place.Fil: Franchino Viñas, Sebastián Alberto. Universitat Jena; Alemania. Consejo Nacional de Investigaciones Científicas y Técnicas. Centro Científico Tecnológico Conicet - La Plata. Instituto de Física La Plata. Universidad Nacional de La Plata. Facultad de Ciencias Exactas. Instituto de Física La Plata; ArgentinaFil: Pisani, P.. Facultad de Ciencias Exactas, Universidad Nacional de la Plata; Argentin

A theoretical model of the endothelial cell morphology due to different waveforms

Endothelial cells are key units in the regulatory biological process of blood vessels. They represent an interface to transmit variations on the fluid dynamic changes. They are able to adapt its cytoskeleton, by means of microtubules reorientation and F-actin reorganization, due to new mechanical environments. Moreover, they are responsible for initiating a huge cascade of biological processes, such as the release of endothelins (ET-1), in charge of the constriction of the vessel and growth factors such as TGF-ß and PDGF. Although a huge efforts have been made in the experimental characterization and description of these two issues the computational modeling has not gained such an attention. In this work we study the 3D remodeling of endothelial cells based on the main features of blood flow. In particular we study how different oscillatory shear index and the time average wall shear stresses modify the endothelial cell shape. We found our model fitted the experimental works presented before in in vitro studies. We also include our model within a computational fluid dynamics simulation of a carotid artery to evaluate endothelial cell shape index which is a key predictor of atheroma plaque formation. Moreover, our approach can be coupled with models of collagen and smooth muscle cell growth, where remodeling and the associated release of chemical substance are involved.Peer ReviewedPostprint (author's final draft

Relative drifts and temperature anisotropies of protons and α\alpha particles in the expanding solar wind -- 2.5D hybrid simulations

We perform 2.5D hybrid simulations to investigate the origin and evolution of relative drift speeds between protons and $\alpha$ particles in the collisionless turbulent low-$\beta$ solar wind plasma. We study the generation of differential streaming by wave-particle interactions and absorption of turbulent wave spectra. Next we focus on the role of the relative drifts for the turbulent heating and acceleration of ions in the collisionless fast solar wind streams. The energy source is given by an initial broad-band spectrum of parallel propagating Alfv\'en-cyclotron waves, which co-exists with the plasma and is self-consistently coupled to the perpendicular ion bulk velocities. We include the effect of a gradual solar wind expansion, which cools and decelerates the minor ions. This paper for the first time considers the combined effect of self-consistently initialized dispersive turbulent Alfv\'enic spectra with differentially streaming protons and $\alpha$ particles in the expanding solar wind outflows within a 2.5D hybrid simulation study. In the non-expanding wind, we find a threshold value of the differential streaming $V_{\alpha p} = 0.5 V_\mathrm{A}$, for which the relative drift speed remains nearly steady. For ions, streaming below the threshold value, the waves act to increase the magnitude of the relative drift speed. Ions, which stream faster than the threshold value become subject to nonlinear streaming instability and as the system evolves their bulk velocities decrease. We find that the solar wind expansion strongly affects the relative drift speeds and significantly slows down both ion species for all values of the relative drift speeds considered in this study.Comment: 11 pages, 13 figures, submitted to A&