A global apparent polar wander path for the last 320 Ma calculated from site-level paleomagnetic data

Apparent polar wander paths (APWPs) calculated from paleomagnetic data describe the motion of tectonic plates relative to the Earth's rotation axis through geological time, providing a quantitative paleogeographic framework for studying the evolution of Earth's interior, surface, and atmosphere. Previous APWPs were typically calculated from collections of paleomagnetic poles, with each pole computed from collections of paleomagnetic sites, and each site representing a spot reading of the paleomagnetic field. It was recently shown that the choice of how sites are distributed over poles strongly determines the confidence region around APWPs and possibly the APWP itself, and that the number of paleomagnetic data used to compute a single paleomagnetic pole varies widely and is essentially arbitrary. Here, we use a recently proposed method to overcome this problem and provide a new global APWP for the last 320 million years that is calculated from simulated site-level paleomagnetic data instead of from paleopoles, in which spatial and temporal uncertainties of the original datasets are incorporated. We provide an updated global paleomagnetic database scrutinized against quantitative, stringent quality criteria, and use an updated global plate motion model. The new global APWP follows the same trend as the most recent pole-based APWP but has smaller uncertainties. This demonstrates that the first-order geometry of the global APWP is robust and reproducible. Moreover, we find that previously identified peaks in APW rate disappear when calculating the APWP from site-level data and correcting for a temporal bias in the underlying data. Finally, we show that a higher-resolution global APWP frame may be determined for time intervals with high data density, but that this is not yet feasible for the entire 320–0 Ma time span. Calculating polar wander from site-level data provides opportunities to significantly improve the quality and resolution of the global APWP by collecting large and well-dated paleomagnetic datasets from stable plate interiors, which may contribute to solving detailed Earth scientific problems that rely on a paleomagnetic reference frame

Analyses of genome architecture and gene expression reveal novel candidate virulence factors in the secretome of Phytophthora infestans

<p>Abstract</p> <p>Background</p> <p><it>Phytophthora infestans </it>is the most devastating pathogen of potato and a model organism for the oomycetes. It exhibits high evolutionary potential and rapidly adapts to host plants. The <it>P. infestans </it>genome experienced a repeat-driven expansion relative to the genomes of <it>Phytophthora sojae </it>and <it>Phytophthora ramorum </it>and shows a discontinuous distribution of gene density. Effector genes, such as members of the RXLR and Crinkler (CRN) families, localize to expanded, repeat-rich and gene-sparse regions of the genome. This distinct genomic environment is thought to contribute to genome plasticity and host adaptation.</p> <p>Results</p> <p>We used <it>in silico </it>approaches to predict and describe the repertoire of <it>P. infestans </it>secreted proteins (the secretome). We defined the "plastic secretome" as a subset of the genome that (i) encodes predicted secreted proteins, (ii) is excluded from genome segments orthologous to the <it>P. sojae </it>and <it>P. ramorum </it>genomes and (iii) is encoded by genes residing in gene sparse regions of <it>P. infestans </it>genome. Although including only ~3% <it>of P. infestans </it>genes, the plastic secretome contains ~62% of known effector genes and shows >2 fold enrichment in genes induced <it>in planta</it>. We highlight 19 plastic secretome genes induced <it>in planta </it>but distinct from previously described effectors. This list includes a trypsin-like serine protease, secreted oxidoreductases, small cysteine-rich proteins and repeat containing proteins that we propose to be novel candidate virulence factors.</p> <p>Conclusions</p> <p>This work revealed a remarkably diverse plastic secretome. It illustrates the value of combining genome architecture with comparative genomics to identify novel candidate virulence factors from pathogen genomes.</p

Reconstructing lost plates of the Panthalassa Ocean through paleomagnetic data from circum-Pacific accretionary orogens

The Panthalassa Ocean, which surrounded the late Paleozoic-early Mesozoic Pangea supercontinent, was underlain by multiple tectonic plates that have since been lost to subduction. In this study, we develop an approach to reconstruct plate motions of this subducted lithosphere utilizing paleomagnetic data from accreted Ocean Plate Stratigraphy (OPS). We first establish the boundaries of the Panthalassa domain by using available Indo-Atlantic plate reconstructions and restorations of complex plate boundary deformation at circum-Panthalassa trenches. We reconstruct the Pacific Plate and its conjugates, the Farallon, Phoenix, and Izanagi plates, back to 190 Ma using marine magnetic anomaly records of the modern Pacific. Then, we present new and review published paleomagnetic data from OPS exposed in the accretionary complexes of Cedros Island (Mexico), the Santa Elena Peninsula (Costa Rica), the North Island of New Zealand, and Japan. These data provide paleolatitudinal plate motion components of the Farallon, Phoenix and Izanagi plates, and constrain the trajectories of these plates from their spreading ridges towards the trenches in which they subducted. For 83 to 150 Ma, we use two independent mantle frames to connect the Panthalassa plate system to the Indo-Atlantic plate system and test the feasibility of this approach with the paleomagnetic data. For times prior to 150 Ma, and as far back as Permian time, we reconstruct relative and absolute Panthalassa plate motions such that divergence is maintained between the Izanagi, Farallon and Phoenix plates, convergence is maintained with Pangean continental margins in Japan, Mexico and New Zealand, and paleomagnetic constraints are met. The reconstruction approach developed here enables data-based reconstruction of oceanic plates and plate boundaries in the absence of marine magnetic anomaly data or mantle reference frames, using Ocean Plate Stratigraphy, paleo-magnetism, and constraints on the nature of circum-oceanic plate boundaries. Such an approach is a crucial next step towards quantitative reconstruction of the currently largely unknown tectonic evolution of the Earth's oceanic domains in deep geological time

Reconstructing lost plates of the Panthalassa Ocean through paleomagnetic data from circum-Pacific accretionary orogens

The Panthalassa Ocean, which surrounded the late Paleozoic-early Mesozoic Pangea supercontinent, was underlain by multiple tectonic plates that have since been lost to subduction. In this study, we develop an approach to reconstruct plate motions of this subducted lithosphere utilizing paleomagnetic data from accreted Ocean Plate Stratigraphy (OPS). We first establish the boundaries of the Panthalassa domain by using available Indo-Atlantic plate reconstructions and restorations of complex plate boundary deformation at circum-Panthalassa trenches. We reconstruct the Pacific Plate and its conjugates, the Farallon, Phoenix, and Izanagi plates, back to 190 Ma using marine magnetic anomaly records of the modern Pacific. Then, we present new and review published paleomagnetic data from OPS exposed in the accretionary complexes of Cedros Island (Mexico), the Santa Elena Peninsula (Costa Rica), the North Island of New Zealand, and Japan. These data provide paleolatitudinal plate motion components of the Farallon, Phoenix and Izanagi plates, and constrain the trajectories of these plates from their spreading ridges towards the trenches in which they subducted. For 83 to 150 Ma, we use two independent mantle frames to connect the Panthalassa plate system to the Indo-Atlantic plate system and test the feasibility of this approach with the paleomagnetic data. For times prior to 150 Ma, and as far back as Permian time, we reconstruct relative and absolute Panthalassa plate motions such that divergence is maintained between the Izanagi, Farallon and Phoenix plates, convergence is maintained with Pangean continental margins in Japan, Mexico and New Zealand, and paleomagnetic constraints are met. The reconstruction approach developed here enables data-based reconstruction of oceanic plates and plate boundaries in the absence of marine magnetic anomaly data or mantle reference frames, using Ocean Plate Stratigraphy, paleo-magnetism, and constraints on the nature of circum-oceanic plate boundaries. Such an approach is a crucial next step towards quantitative reconstruction of the currently largely unknown tectonic evolution of the Earth's oceanic domains in deep geological time