Superrigid subgroups and syndetic hulls in solvable Lie groups

This is an expository paper. It is not difficult to see that every group homomorphism from the additive group Z of integers to the additive group R of real numbers extends to a homomorphism from R to R. We discuss other examples of discrete subgroups D of connected Lie groups G, such that the homomorphisms defined on D can ("virtually") be extended to homomorphisms defined on all of G. For the case where G is solvable, we give a simple proof that D has this property if it is Zariski dense. The key ingredient is a result on the existence of syndetic hulls.Comment: 17 pages. This is the final version that will appear in the volume "Rigidity in Dynamics and Geometry," edited by M. Burger and A. Iozzi (Springer, 2002

An Automated Phenotype-Driven Approach (GeneForce) for Refining Metabolic and Regulatory Models

Integrated constraint-based metabolic and regulatory models can accurately predict cellular growth phenotypes arising from genetic and environmental perturbations. Challenges in constructing such models involve the limited availability of information about transcription factor—gene target interactions and computational methods to quickly refine models based on additional datasets. In this study, we developed an algorithm, GeneForce, to identify incorrect regulatory rules and gene-protein-reaction associations in integrated metabolic and regulatory models. We applied the algorithm to refine integrated models of Escherichia coli and Salmonella typhimurium, and experimentally validated some of the algorithm's suggested refinements. The adjusted E. coli model showed improved accuracy (∼80.0%) for predicting growth phenotypes for 50,557 cases (knockout mutants tested for growth in different environmental conditions). In addition to identifying needed model corrections, the algorithm was used to identify native E. coli genes that, if over-expressed, would allow E. coli to grow in new environments. We envision that this approach will enable the rapid development and assessment of genome-scale metabolic and regulatory network models for less characterized organisms, as such models can be constructed from genome annotations and cis-regulatory network predictions

Genome-Scale Modeling of Light-Driven Reductant Partitioning and Carbon Fluxes in Diazotrophic Unicellular Cyanobacterium Cyanothece sp. ATCC 51142

Genome-scale metabolic models have proven useful for answering fundamental questions about metabolic capabilities of a variety of microorganisms, as well as informing their metabolic engineering. However, only a few models are available for oxygenic photosynthetic microorganisms, particularly in cyanobacteria in which photosynthetic and respiratory electron transport chains (ETC) share components. We addressed the complexity of cyanobacterial ETC by developing a genome-scale model for the diazotrophic cyanobacterium, Cyanothece sp. ATCC 51142. The resulting metabolic reconstruction, iCce806, consists of 806 genes associated with 667 metabolic reactions and includes a detailed representation of the ETC and a biomass equation based on experimental measurements. Both computational and experimental approaches were used to investigate light-driven metabolism in Cyanothece sp. ATCC 51142, with a particular focus on reductant production and partitioning within the ETC. The simulation results suggest that growth and metabolic flux distributions are substantially impacted by the relative amounts of light going into the individual photosystems. When growth is limited by the flux through photosystem I, terminal respiratory oxidases are predicted to be an important mechanism for removing excess reductant. Similarly, under photosystem II flux limitation, excess electron carriers must be removed via cyclic electron transport. Furthermore, in silico calculations were in good quantitative agreement with the measured growth rates whereas predictions of reaction usage were qualitatively consistent with protein and mRNA expression data, which we used to further improve the resolution of intracellular flux values

A High-Resolution Transmission of the Precipitation Process in a Electron Microscopy Study Dilute Ti-N Alloy

The precipitation processes in dilute nitrogen alloys of titanium have been examined in detail by conventional transmission electron microscopy (CTEM) and high-resolution electron microscopy (HREM). The alloy Ti-2 at. pct N on quenching from its high-temperature beta phase field has been found to undergo early stages of decomposition. The supersaturated solid solution (alpha''-hcp) on decomposition gives rise to an intimately mixed, irresolvable product microstructure. The associated strong tweed contrast presents difficulties in understanding the characteristic features of the process. Therefore, HREM has been carried out with a view to getting a clear picture of the decomposition process. Studies on the quenched samples of the alloy suggest the formation of solute-rich zones of a few atom layers thick, randomly distributed throughout the matrix. On aging, these zones grow to a size beyond which the precipitate/matrix interfaces appear to become incoherent and the alpha' (tetragonal) product phase is seen distinctly. The structural details, the crystallography of the precipitation process, and the sequence of precipitation reaction in the system are illustrated

Interface Structures in Nanocrystalline Materials

Grain boundary and triple junction structures in nanocrystalline palladium and titanium thin films and in nanocrystalline thorium dioxide powder and sintered pellets have been studied. Amorphous packets with bright contrast are seen in many of the grain boundary junctions and are considered to form as a result of the relaxation of triple junction disclinations. The varying degrees of relaxation of disclinations in NC's lead to a variety of grain boundary structures and are also responsible for the random variation in its lattice parameter in the different nanocrystalline grains. Nanocrystalline state has been suggested to be a desirable microstructural criterion for solid state amorphization. Further it is to be pointed out that no special features which could be attributed to the nature of bonding in the two materials were seen in this study

Structure and vibrational properties of carbon tubules

The structure of multilayered carbon tubules has been investigated by electron microscopy and X-ray diffraction. The structure of tubules is characterized by disorder in the stacking of cylindrical graphene sheets. Raman scattering measurements have been carried out in tubules and compared with graphite. The observed features in the Raman spectra in tubules can be understood in terms of the influence of disorder. The additional Raman modes predicted for single layer carbon tubules have not been observed