Proteomic and Physiological Responses of Kineococcus radiotolerans to Copper

Copper is a highly reactive, toxic metal; consequently, transport of this metal within the cell is tightly regulated. Intriguingly, the actinobacterium Kineococcus radiotolerans has been shown to not only accumulate soluble copper to high levels within the cytoplasm, but the phenotype also correlated with enhanced cell growth during chronic exposure to ionizing radiation. This study offers a first glimpse into the physiological and proteomic responses of K. radiotolerans to copper at increasing concentration and distinct growth phases. Aerobic growth rates and biomass yields were similar over a range of Cu(II) concentrations (0–1.5 mM) in complex medium. Copper uptake coincided with active cell growth and intracellular accumulation was positively correlated with Cu(II) concentration in the growth medium (R2 = 0.7). Approximately 40% of protein coding ORFs on the K. radiotolerans genome were differentially expressed in response to the copper treatments imposed. Copper accumulation coincided with increased abundance of proteins involved in oxidative stress and defense, DNA stabilization and repair, and protein turnover. Interestingly, the specific activity of superoxide dismutase was repressed by low to moderate concentrations of copper during exponential growth, and activity was unresponsive to perturbation with paraquot. The biochemical response pathways invoked by sub-lethal copper concentrations are exceptionally complex; though integral cellular functions are preserved, in part, through the coordination of defense enzymes, chaperones, antioxidants and protective osmolytes that likely help maintain cellular redox. This study extends our understanding of the ecology and physiology of this unique actinobacterium that could potentially inspire new biotechnologies in metal recovery and sequestration, and environmental restoration

Andean Microbial Ecosystems: Traces in Hypersaline Lakes About Life Origin

High-altitude Andean lakes (HAALs) represent unique environments on the Earth where one can study the biological chemistry of life in one of its most extreme versions. The Atacama Desert, Argentine Puna, and Bolivian Altiplano harbor hypersaline lakes where polyextremophilic Andean Microbial Ecosystems (AMEs) inhabit microbial mats, evaporitic mats, biofilms (BF), evaporites (EV), and microbialites (Mi). These AMEs have two remarkable characteristics: (i) they are the only ones in the world that inhabit areas ranging from 3100 to 4200 masl; and (ii) they are excellent modern analogues of those which populated the primitive Earth ~3 billion years ago. In this chapter, we will delve into the different kinds of AMEs present in the HAAL, their formation, structure, and their adaptation to conditions largely influenced by volcanic activity, UV radiation, arsenic content, high salinity, low dissolved oxygen content, extreme daily temperature fluctuation, and oligotrophic conditions. All of these physicochemical parameters recreate the early Earth and even extraterrestrial conditions. The relevance of studying these ecosystems does not lie only in scientific-descriptive and/or economic interest. The scientific research community has a great responsibility to address climate change. In this scenario, the AMEs could have played a key role, influencing changes that allowed the origin of aerobic life and those who have faced the great climatic events of the Earth.Fil: Saona Acuña, Luis Alberto. Consejo Nacional de Investigaciones Científicas y Técnicas. Centro Científico Tecnológico Conicet - Tucumán. Planta Piloto de Procesos Industriales Microbiológicos; ArgentinaFil: Soria, Mariana Noelia. Consejo Nacional de Investigaciones Científicas y Técnicas. Centro Científico Tecnológico Conicet - Tucumán. Planta Piloto de Procesos Industriales Microbiológicos; ArgentinaFil: Villafañe, Patricio Guillermo. Consejo Nacional de Investigaciones Científicas y Técnicas. Centro Científico Tecnológico Conicet - Tucumán. Planta Piloto de Procesos Industriales Microbiológicos; ArgentinaFil: Lencina, Agustina Inés. Consejo Nacional de Investigaciones Científicas y Técnicas. Centro Científico Tecnológico Conicet - Tucumán. Planta Piloto de Procesos Industriales Microbiológicos; ArgentinaFil: Stepanenko, Tatiana Mariel. Consejo Nacional de Investigaciones Científicas y Técnicas. Centro Científico Tecnológico Conicet - Tucumán. Planta Piloto de Procesos Industriales Microbiológicos; ArgentinaFil: Farias, Maria Eugenia. Consejo Nacional de Investigaciones Científicas y Técnicas. Centro Científico Tecnológico Conicet - Tucumán. Planta Piloto de Procesos Industriales Microbiológicos; Argentin

A Unique Natural Laboratory to Study Polyextremophile Microorganisms: Diamante Lake as a Window to the Origin of Life

Diamante Lake is located at 4589 m above sea level (m a.s.l.) inside the Galán Volcano caldera and presents extreme environmental conditions, such as high arsenic concentration (210 mg l−1), salinity, pH and UV radiation. Until 2010, most studies in the area had largely overlooked the microbial biodiversity in Diamante Lake. With the advent of high throughput sequencing, it became possible to study the microbial communities of environmental samples using metagenomic approaches. In a recent work, we discovered red biofilms forming on the surface of sedimentary rocks on the bottom of the lake containing the rare mineral gaylussite. A metagenomic analysis of these biofilms revealed a predominance of haloarchaea (>96%) over other prokaryotic or eukaryotic organisms. To thrive under the extreme conditions in the lake, these biofilms use different metabolic and physiologic strategies: (1) to avoid the arsenic uptake into the cell, this is done through highly specific phosphate transporters (Pst) and consequently, (2) to take advantage bioenergetically of the high extracellular arsenic concentration and obtain energy from arsenite oxidation and to perform anaerobic respiration of arsenate. Contrary to what could be expected, the required enzymes for these arsenic metabolisms were likely not acquired recently by the selective pressure within Diamante Lake, but rather correspond to reminiscences of primitive metabolisms that could date back to even the origins of the haloarchaea lineage billions of years ago. Diamante Lake is a unique environment in the world and represents an open window to study the evolution of life on Earth and the adaptations required to survive under the extreme conditions that prevailed on the ancient Earth and that are currently found on other planets.Fil: Stepanenko, Tatiana Mariel. Consejo Nacional de Investigaciones Científicas y Técnicas. Centro Científico Tecnológico Conicet - Tucumán. Planta Piloto de Procesos Industriales Microbiológicos; ArgentinaFil: Soria, Mariana Noelia. Consejo Nacional de Investigaciones Científicas y Técnicas. Centro Científico Tecnológico Conicet - Tucumán. Planta Piloto de Procesos Industriales Microbiológicos; ArgentinaFil: Saona Acuña, Luis Alberto. Consejo Nacional de Investigaciones Científicas y Técnicas. Centro Científico Tecnológico Conicet - Tucumán. Planta Piloto de Procesos Industriales Microbiológicos; ArgentinaFil: Lencina, Agustina Inés. Consejo Nacional de Investigaciones Científicas y Técnicas. Centro Científico Tecnológico Conicet - Tucumán. Planta Piloto de Procesos Industriales Microbiológicos; ArgentinaFil: Farias, Maria Eugenia. Consejo Nacional de Investigaciones Científicas y Técnicas. Centro Científico Tecnológico Conicet - Tucumán. Planta Piloto de Procesos Industriales Microbiológicos; Argentin

Modern microbial mats and endoevaporites systems in Andean lakes a general approach

Puna wetlands and salars are a unique extreme environment all over the world, since their locations are in high-altitude saline deserts, largely influenced by volcanic activity. Ultraviolet radiation, arsenic content, high salinity, and low dissolved oxygen content, together with extreme daily temperature fluctuations and oligotrophic conditions, shape an environment that recreates the early Earth and, even more so, extraterrestrial conditions. Microbes inhabiting extreme environments face these conditions with different strategies, including formation of intricate microbial communities with an increasing degree of complexity. In that way, biofilms, mats, endoevaporitic mats, domes, and microbialites have been found to exist in association with salars, lagoons, and even volcanic fumaroles in Central Andean extreme environments. They form microbial ecosystems, where light and O2 availability decrease with depth stratification, promoting functional group diversity. This microbial diversity, together with the geochemistry, may favor the precipitation of minerals. This chapter summarizes general concepts in the environmental microbiology of extreme Andean ecosystems, which are explored throughout this book.Fil: Farias, Maria Eugenia. Consejo Nacional de Investigaciones Científicas y Técnicas. Centro Científico Tecnológico Conicet - Tucumán. Planta Piloto de Procesos Industriales Microbiológicos; ArgentinaFil: Saona Acuña, Luis Alberto. Consejo Nacional de Investigaciones Científicas y Técnicas. Centro Científico Tecnológico Conicet - Tucumán. Planta Piloto de Procesos Industriales Microbiológicos; Argentin

Classification of thermophilic actinobacteria isolated from arid desert soils, including the description of Amycolatopsis deserti sp. nov.

The taxonomic position of 26 filamentous actinobacteria isolated from a hyper-arid Atacama Desert soil and 2 from an arid Australian composite soil was established using a polyphasic approach. All of the isolates gave the diagnostic amplification product using 16S rRNA oligonucleotide primers specific for the genus Amycolatopsis. Representative isolates had chemotaxonomic and morphological properties typical of members of the genus Amycolatopsis. 16S rRNA gene analyses showed that all of the isolates belong to the Amycolatopsis methanolica 16S rRNA gene clade. The Atacama Desert isolates were assigned to one or other of two recognised species, namely Amycolatopsis ruanii and Amycolatopsis thermalba, based on 16S rRNA gene sequence, DNA:DNA relatedness and phenotypic data; emended descriptions are given for these species. In contrast, the two strains from the arid Australian composite soil, isolates GY024T and GY142, formed a distinct branch at the periphery of the A. methanolica 16S rRNA phyletic line, a taxon that was supported by all of the tree-making algorithms and by a 100 % bootstrap value. These strains shared a high degree of DNA:DNA relatedness and have many phenotypic properties in common, some of which distinguished them from all of the constituent species classified in the A. methanolica 16S rRNA clade. Isolates GY024T and GY142 merit recognition as a new species within the A. methanolica group of thermophilic strains. The name proposed for the new species is Amycolatopsis deserti sp. nov.; the type strain is GY024T (=NCIMB 14972T = NRRL B-65266T)

Arsenic and Its Biological Role: From Early Earth to Current Andean Microbial Ecosystems

Arsenic (As) is present in the Earth's crust and is widely distributed in the environment. It is frequently a component of sulfidic ores in the form of arsenides of nickel, cobalt, copper, and iron. The main sources of As are natural, mostly associated with volcanic areas and hydrothermal vents; further, it can also originate as a result of human activities: mining, waste treatment, and industrial activities, among others.Arsenic is a redox-active metalloid and exists in nature in four oxidation states: arsine [As(-III)], elemental [As(0)], arsenate [As(V)], and arsenite [As(III)]. These states vary according to changes in pH and the redox environment. The first two forms are relatively rare; naturally, As is found as As(V) or As(III). As(V) is predominant in oxygenated aqueous environments, while As(III) is found in reduced or anoxic conditions. Arsenic is a highly dangerous element, as As(III) is 100 times more toxic than As(V). Its greatest toxicity is due to the fact that it can bind to sulfhydryl groups, affecting the correct functioning of many enzymes and proteins. As(V), on the other hand, is a chemical analog of phosphate, so it can interact and eventually replace it in early steps in different ways. On our planet, there are environments with a high arsenic content.Our research group has worked in bioprospecting in Andean microbial ecosystems (AMEs) in the Atacama Desert, Bolivian Altiplano, and Argentine Puna (the so-called Puna?High Andes region). In all of these places, there are hypersaline lakes at altitudes higher than 3000 m above sea level (asl). These lakes share the common characteristic of high concentrations of arsenic, normally ranging between 12 and 230 mg L−1. This range of As concentrations is one of the highest ranges reported for hypersaline lakes.Fil: Saona Acuña, Luis Alberto. Consejo Nacional de Investigaciones Científicas y Técnicas. Centro Científico Tecnológico Conicet - Tucumán. Planta Piloto de Procesos Industriales Microbiológicos; ArgentinaFil: Soria, Mariana Noelia. Consejo Nacional de Investigaciones Científicas y Técnicas. Centro Científico Tecnológico Conicet - Tucumán. Planta Piloto de Procesos Industriales Microbiológicos; ArgentinaFil: Villafañe, Patricio Guillermo. Consejo Nacional de Investigaciones Científicas y Técnicas. Centro Científico Tecnológico Conicet - Tucumán. Planta Piloto de Procesos Industriales Microbiológicos; ArgentinaFil: Stepanenko, Tatiana Mariel. Consejo Nacional de Investigaciones Científicas y Técnicas. Centro Científico Tecnológico Conicet - Tucumán. Planta Piloto de Procesos Industriales Microbiológicos; ArgentinaFil: Farias, Maria Eugenia. Consejo Nacional de Investigaciones Científicas y Técnicas. Centro Científico Tecnológico Conicet - Tucumán. Planta Piloto de Procesos Industriales Microbiológicos; Argentin