Nonlinear software sensor for monitoring genetic regulation processes with noise and modeling errors

Nonlinear control techniques by means of a software sensor that are commonly used in chemical engineering could be also applied to genetic regulation processes. We provide here a realistic formulation of this procedure by introducing an additive white Gaussian noise, which is usually found in experimental data. Besides, we include model errors, meaning that we assume we do not know the nonlinear regulation function of the process. In order to illustrate this procedure, we employ the Goodwin dynamics of the concentrations [B.C. Goodwin, Temporal Oscillations in Cells, (Academic Press, New York, 1963)] in the simple form recently applied to single gene systems and some operon cases [H. De Jong, J. Comp. Biol. 9, 67 (2002)], which involves the dynamics of the mRNA, given protein, and metabolite concentrations. Further, we present results for a three gene case in co-regulated sets of transcription units as they occur in prokaryotes. However, instead of considering their full dynamics, we use only the data of the metabolites and a designed software sensor. We also show, more generally, that it is possible to rebuild the complete set of nonmeasured concentrations despite the uncertainties in the regulation function or, even more, in the case of not knowing the mRNA dynamics. In addition, the rebuilding of concentrations is not affected by the perturbation due to the additive white Gaussian noise and also we managed to filter the noisy output of the biological systemComment: 21 pages, 7 figures; also selected in vjbio of August 2005; this version corrects a misorder in the last three references of the published versio

Mediated gates between spin qubits

In a typical quantum circuit, nonlocal quantum gates are applied to nonproximal qubits. If the underlying physical interactions are short-range (e.g., exchange interactions between spins), intermediate swap operations must be introduced, thus increasing the circuit depth. Here we develop a class of "mediated" gates for spin qubits, which act on nonproximal spins via intermediate ancilla qubits. At the end of the operation, the ancillae return to their initial states. We show how these mediated gates can be used (1) to generate arbitrary quantum states and (2) to construct arbitrary quantum gates. We provide some explicit examples of circuits that generate common states [e.g., Bell, Greenberger-Horne-Zeilinger (GHZ), W, and cluster states] and gates (e.g.,square-root-SWAP, SWAP, CNOT, and Toffoli gates). We show that the depths of these circuits are often shorter than those of conventional swap-based circuits. We also provide an explicit experimental proposal for implementing a mediated gate in a triple-quantum-dot system.Comment: 12 pages, 8 figures, 2 table

Factorization of gravitational Compton scattering amplitude in the linearized version of general relativity

Gravitational Compton scattering process with a massive fermion is studied in the context of the linearized gravity. Gravitational gauge invariance and graviton transversality cause the transition amplitude to be factorized into that of scalar QED Compton scattering and that of fermion QED Compton scattering with an overall kinematical factor. The factorization is shown explicitly and its physical implications are discussed.Comment: 11 pages, 1 figure(not included), Revtex 3.0, SNUTP 93-2

Prediction of Anisotropic Single-Dirac-Cones in Bi1−x{}_{1-x}Sbx{}_{x} Thin Films

The electronic band structures of Bi${}_{1-x}$Sb${}_{x}$ thin films can be varied as a function of temperature, pressure, stoichiometry, film thickness and growth orientation. We here show how different anisotropic single-Dirac-cones can be constructed in a Bi${}_{1-x}$Sb${}_{x}$ thin film for different applications or research purposes. For predicting anisotropic single-Dirac-cones, we have developed an iterative-two-dimensional-two-band model to get a consistent inverse-effective-mass-tensor and band-gap, which can be used in a general two-dimensional system that has a non-parabolic dispersion relation as in a Bi${}_{1-x}$Sb${}_{x}$ thin film system

Pressure-induced magnetic transition and volume collapse in FeAs superconductors: An orbital-selective Mott scenario

Motivated by pressure experiments on FeAs-122 superconductors, we propose a scenario based on local-moment physics to explain the simultaneous disappearance of magnetism, reduction of the unit cell volume, and decrease in resistivity. In this scenario, the low-pressure magnetic phase derives from Fe moments, which become screened in the paramagnetic high-pressure phase. The quantum phase transition can be described as an orbital-selective Mott transition, which is rendered first order by coupling to the lattice, in analogy to a Kondo volume collapse. Spin-fluctuation driven superconductivity competes with antiferromagnetism and may be stabilized at low temperatures in the high-pressure phase. The ideas are illustrated by a suitable mean-field analysis of an Anderson lattice model.Comment: 9 pages, 3 figs; (v2) robustness of OS Mott transition vs. fragility of superconductivity discussed, final version to be publishe

A Survey of Air-to-Ground Propagation Channel Modeling for Unmanned Aerial Vehicles

In recent years, there has been a dramatic increase in the use of unmanned aerial vehicles (UAVs), particularly for small UAVs, due to their affordable prices, ease of availability, and ease of operability. Existing and future applications of UAVs include remote surveillance and monitoring, relief operations, package delivery, and communication backhaul infrastructure. Additionally, UAVs are envisioned as an important component of 5G wireless technology and beyond. The unique application scenarios for UAVs necessitate accurate air-to-ground (AG) propagation channel models for designing and evaluating UAV communication links for control/non-payload as well as payload data transmissions. These AG propagation models have not been investigated in detail when compared to terrestrial propagation models. In this paper, a comprehensive survey is provided on available AG channel measurement campaigns, large and small scale fading channel models, their limitations, and future research directions for UAV communication scenarios

Band Calculations for Ce Compounds with AuCu3_{3}-type Crystal Structure on the basis of Dynamical Mean Field Theory I. CePd3_{3} and CeRh3_{3}

Band calculations for Ce compounds with the AuCu$_{3}$-type crystal structure were carried out on the basis of dynamical mean field theory (DMFT). The auxiliary impurity problem was solved by a method named NCA$f^{2}$vc (noncrossing approximation including the $f^{2}$ state as a vertex correction). The calculations take into account the crystal-field splitting, the spin-orbit interaction, and the correct exchange process of the $f^{1} \rightarrow f^{0},f^{2}$ virtual excitation. These are necessary features in the quantitative band theory for Ce compounds and in the calculation of their excitation spectra. The results of applying the calculation to CePd$_{3}$ and CeRh$_{3}$ are presented as the first in a series of papers. The experimental results of the photoemission spectrum (PES), the inverse PES, the angle-resolved PES, and the magnetic excitation spectra were reasonably reproduced by the first-principles DMFT band calculation. At low temperatures, the Fermi surface (FS) structure of CePd$_{3}$ is similar to that of the band obtained by the local density approximation. It gradually changes into a form that is similar to the FS of LaPd$_{3}$ as the temperature increases, since the $4f$ band shifts to the high-energy side and the lifetime broadening becomes large.}Comment: 12 pasges, 13 figure

Water-Gated Charge Doping of Graphene Induced by Mica Substrates

We report on the existence of water-gated charge doping of graphene deposited on atomically flat mica substrates. Molecular films of water in units of ~0.4 nm-thick bilayers were found to be present in regions of the interface of graphene/mica hetero-stacks prepared by micromechanical exfoliation of kish graphite. The spectral variation of the G and 2D bands, as visualized by Raman mapping, shows that mica substrates induce strong p-type doping in graphene, with hole densities of $(9 \pm 2) \times 1012 cm${-2}$. The ultrathin water films, however, effectively block interfacial charge transfer, rendering graphene significantly less hole-doped. Scanning Kelvin probe microscopy independently confirmed a water-gated modulation of the Fermi level by 0.35 eV, in agreement with the optically determined hole density. The manipulation of the electronic properties of graphene demonstrated in this study should serve as a useful tool in realizing future graphene applications.Comment: 15 pages, 4 figures; Nano Letters, accepted (2012

Factorization and polarization in linearized gravity

We investigate all the four-body graviton interaction processes: $gX\rightarrow \gamma X$, $gX\rightarrow gX$, and $gg\rightarrow gg$ with $X$ as an elementary particle of spin less than two in the context of linearized gravity except the spin-3/2 case. We show explicitly that gravitational gauge invariance and Lorentz invariance cause every four-body graviton scattering amplitude to be factorized. We explore the implications of this factorization property by investigating polarization effects through the covariant density matrix formalism in each four-body graviton scattering process.Comment: 45 pages, figures are included (uses pictex), RevTe