Chlamydia pan-genomic analysis reveals balance between host adaptation and selective pressure to genome reduction

Background Chlamydia are ancient intracellular pathogens with reduced, though strikingly conserved genome. Despite their parasitic lifestyle and isolated intracellular environment, these bacteria managed to avoid accumulation of deleterious mutations leading to subsequent genome degradation characteristic for many parasitic bacteria. Results We report pan-genomic analysis of sixteen species from genus Chlamydia including identification and functional annotation of orthologous genes, and characterization of gene gains, losses, and rearrangements. We demonstrate the overall genome stability of these bacteria as indicated by a large fraction of common genes with conserved genomic locations. On the other hand, extreme evolvability is confined to several paralogous gene families such as polymorphic membrane proteins and phospholipase D, and likely is caused by the pressure from the host immune system. Conclusions This combination of a large, conserved core genome and a small, evolvable periphery likely reflect the balance between the selective pressure towards genome reduction and the need to adapt to escape from the host immunity

NOVEL ORGANIC MATERIALS FOR NON-AQUEOUS REDOX FLOW BATTERIES: IMPLEMENTATION OF TRIARYLAMINE AND PHENAZINE CORE STRUCTURES

The rapid growth of the role of renewable energy sources dictates new requirements for the electrochemical energy storage devices. Among them, redox flow batteries (RFBs) are regarded as a promising technology, since their advantages of excellent scalability, low cost, easy fabrication and operation, long lifetime, and safety. Today inorganic RFBs are penetrating the market, however, low specific capacity in conjunction with with low electrochemical stability window of aqueous electrolytes (≈1.5 V) and safety issues, hinders their wide-scale commercialization

Phenazine-Based Compound as a Universal Water-Soluble Anolyte Material for the Redox Flow Batteries

Aqueous organic redox flow batteries (AORFBs) are emerging energy storage technologies due to their high availability, low cost of organic compounds, and the use of eco-friendly water-based supporting electrolytes. In the present work, we demonstrate a unique phenazine-based material that shows redox reversibility in neutral, basic, and acidic conditions with the redox potentials of −0.85 V (1.0 M KOH), −0.67 V (1.0 M NaCl), −0.26 V, and 0.05 V (1.0 M H2SO4) vs. the Ag/AgCl reference electrode and two-electron transfer process at all pH values. High solubility of the phenazine compound in water-based electrolytes up to 1.3 M is achieved by introducing quaternary amonium-based substituents, leading to the outstanding theoretical volumetric capacity of 70 Ah L−1. Laboratory redox flow batteries in neutral and acidic electrolytes presented >100 cycles of stable operation with a capacity loss of 0.25 mAh L−1 and 1.29 mAh L−1 per cycle, respectively. The obtained results demonstrate a material with the potential for not only fundamental understanding but also the practical application of AORFBs in the development of new-generation energy storage technologies

One-Pot Synthesis of Hyperbranched Polyurethane-Triazoles with Controlled Structural, Molecular Weight and Hydrodynamic Characteristics

We report a simple and convenient approach to the one-pot synthesis of hyperbranched polyurethane-triazoles with desirable properties. This method is based on in situ generation of an AB2 + A2 + B4 azide-acetylene monomer mixture of known composition, due to quantitative reactions of urethane formation between isophorone diisocyanate (IPDI), 1,3-diazidopropanol-2 (DAPOL) (in the first stage) and propargyl alcohol (in the second stage). The obtained monomer mixture can be involved in step-growth polymerization by azide-alkyne cycloaddition without additional purification (in the third stage). The properties of the resulting polymers should depend on the composition of the monomer mixture. Therefore, first the model revealing the correlation between the monomer composition and the ratio and reactivity of the IPDI and DAPOL active groups is developed and proven. In addition, the newly developed structural kinetic model considering the substitution effect at polyaddition of the complex mixture of monomers allows the prediction of the degree of branching of the target polymer. Based on our calculations, the hyperbranched polyurethane-triazoles were synthesized under found conditions. All products were characterized by 1H NMR, FTIR, SEC, DLS, DSC, TGA and viscometry methods. It was shown that the degree of branching, molecular weight, intrinsic viscosity, and hydrodynamic radius of the final hyperbranched polymers can be specified at the first stage of one-pot synthesis. The obtained hyperbranched polyurethane-triazoles showed a degree of branching from 0.21 to 0.44 (calculated DB-0.25 and 0.45, respectively)

High-Performing Polycarbazole Derivatives for Efficient Solution-Processing of Organic Solar Cells in Air

The application of conjugated materials in organic photovoltaics (OPVs) is usually demonstrated in lab-scale spin-coated devices that are processed under controlled inert conditions. Although this is a necessary step to prove high efficiency, testing of promising materials in air should be done in the early stages of research to validate their real potential for low-cost, solution-processed, and large-scale OPVs. Also relevant for approaching commercialization needs is the use of printing techniques that are compatible with upscaling. Here, solution processing of organic solar cells based on three new poly(2,7-carbazole) derivatives is efficiently transferred, without significant losses, to air conditions and to several deposition methods using a simple device architecture. High efficiencies in the range between 5.0 % and 6.3 % are obtained in (rigid) spin-coated, doctor-bladed, and (flexible) slot-die-coated devices, which surpass the reference devices based on poly[N-9′-heptadecanyl-2,7-carbazole-alt-5,5-(4′,7′-di-2-thienyl-2′,1′,3′-benzothiadiazole)] (PCDTBT). In contrast, inkjet printing does not provide reliable results with the presented polymers, which is attributed to their high molecular weight. When the device area in the best-performing system is increased from 9 mm2 to 0.7 cm2, the efficiency drops from 6.2 % to 5.0 %. Photocurrent mapping reveals inhomogeneous current generation derived from changes in the thickness of the active layer

Additional file 21 of Chlamydia pan-genomic analysis reveals balance between host adaptation and selective pressure to genome reduction

All polyN tracts of length 5 or more nucleotides in sequences of genes from OG1. Sequences were extracted and scanned prior to automatic correction for frameshifts implemented in the RAST pipeline. (CSV 133 kb

Additional file 16 of Chlamydia pan-genomic analysis reveals balance between host adaptation and selective pressure to genome reduction

Distribution of OGs with mosaic phyletic patterns across species (all genomes). (CSV 10 kb