Whole-Genome Sequencing of Pigeonpea: Requirement, Background History, Current Status and Future Prospects for Crop Improvement

Despite of being a very important crop, pigeonpea did not have genomic resources until 2005. Pigeonpea Genomics Initiative (PGI) supported by Indian Council of Agricultural Research (ICAR) under Indo-US Agriculture Knowledge Initiative was the first major initiative that delivered first set of molecular markers in large numbers, first set of mapping populations, first set of transcriptome assemblies, etc. Subsequently, two consortia—1) International Initiative for Pigeonpea Genomics (IIPG), led by International Crops Research Institute for the Semi-Arid Tropics (ICRISAT) and 2) Led by National Research Centre on Plant Biotechnology (NRCPB)—delivered two draft genome assemblies for Asha (ICPL 87119) variety. In summary, all these genomic resources transformed pigeonpea from an ‘orphan crop’ to ‘genomics resources-rich crop’. After publication of draft genome sequences, a detailed plan was developed to utilize draft genome information for pigeonpea improvement. This plan in the form of a proposal was approved by Ministry of Agriculture, Government of India and United States Agency for International Development (USAID)—India. In addition to this major project, two additional projects were funded by Department of Biotechnology, Government of India. All these efforts have established high-density genotyping platforms such as genotyping by sequencing (GBS) and ​‘Axiom® CajanusSNP Array’, produced the first generation HapMap, generated whole-genome re-sequencing data of >400 pigeonpea lines, evaluated several mapping populations for desired traits, established marker–trait association for several traits of interest to breeders and also identified best-performing lines. Additionally, multi-parent advance generation inter-cross (MAGIC) and nested association mapping (NAM) populations are being developed. With the availability of above-mentioned information, next few years will be witnessing application of genomics-assisted breeding for pigeonpea improvement. It is anticipated that improved pigeonpea lines developed through genomics interventions will reach to farmers’ fields and elevate the game towards pulse sufficiency for poor farmers in arid and semi-arid regions of the world in near future

Adult attention deficit hyperactivity disorder symptom profiles and concurrent problems with alcohol and cannabis: Sex differences in a representative, population survey

Background: Adult attention deficit hyperactivity disorder (ADHD) shows a robust association with alcohol and cannabis misuse, and these relationships are expressed differently in males and females. Manifestation of specific ADHD symptom profiles, even in the absence of the full disorder, may also be related to problems with alcohol and cannabis, although these relationships have not been investigated in epidemiological studies. To address this question, we studied the sex-specific associations of ADHD symptomatology with problematic alcohol and cannabis use in a representative sample of adults aged 18 years and older residing in Ontario, Canada. Methods: Data were obtained from the Centre for Addiction and Mental Health Monitor, an ongoing cross-sectional telephone survey, between January 2011 and December 2013. Respondents (n = 5080) reported on current ADHD symptomatology, measured using the Adult ADHD Self-Report Version 1.1 Screener (ASRS-V1.1) and four additional items, and alcohol and cannabis use, which were measured using the Alcohol Use Disorders Identification Test (AUDIT) and the Alcohol, Smoking and Substance Involvement Screening Test (ASSIST), respectively. Logistic regression analyses were conducted in men and women to test the association of each ADHD symptom cluster (hyperactivity, inattentiveness, impulsivity) with problematic alcohol and cannabis use. Results: After controlling for age, education, and comorbid internalizing and externalizing psychopathology, hyperactive symptoms were associated with problematic alcohol use in both men and women and with problematic cannabis use in men. Impulsive symptoms were independently associated with problematic cannabis use in men. By contrast, inattentive symptomatology predicted problems with alcohol and cannabis only in women. In all models, age was negatively associated with substance misuse and externalizing behavior was positively correlated and the strongest predictor of hazardous alcohol and cannabis use. Conclusions: ADHD symptom expression in adulthood is related to concurrent hazardous use of alcohol and cannabis. Distinctive ADHD symptom profiles may confer increased risk for substance misuse in a sex-specific manner

Advances in genetics and molecular breeding of three legume crops of semi-arid tropics using next-generation sequencing and high-throughput genotyping technologies

Molecular markers are the most powerful genomic tools to increase the efficiency and precision of breeding practices for crop improvement. Progress in the development of genomic resources in the leading legume crops of the semi-arid tropics (SAT), namely, chickpea (Cicer arietinum), pigeonpea (Cajanus cajan) and groundnut (Arachis hypogaea), as compared to other crop species like cereals, has been very slow. With the advances in next-generation sequencing (NGS) and high-throughput (HTP) genotyping methods, there is a shift in development of genomic resources including molecular markers in these crops. For instance, 2,000 to 3,000 novel simple sequence repeats (SSR) markers have been developed each for chickpea, pigeonpea and groundnut. Based on Sanger, 454/FLX and Illumina transcript reads, transcriptome assemblies have been developed for chickpea (44,845 transcript assembly contigs, or TACs) and pigeonpea (21,434 TACs). Illumina sequencing of some parental genotypes of mapping populations has resulted in the development of 120 million reads for chickpea and 128.9 million reads for pigeonpea. Alignment of these Illumina reads with respective transcriptome assemblies have provided >10,000 SNPs each in chickpea and pigeonpea. A variety of SNP genotyping platforms including GoldenGate, VeraCode and Competitive Allele Specific PCR (KASPar) assays have been developed in chickpea and pigeonpea. By using above resources, the first-generation or comprehensive genetic maps have been developed in the three legume speciesmentioned above. Analysis of phenotyping data together with genotyping data has provided candidate markers for drought-tolerance-related root traits in chickpea, resistance to foliar diseases in groundnut and sterility mosaic disease (SMD) and fertility restoration in pigeonpea. Together with these traitassociated markers along with those already available, molecular breeding programmes have been initiated for enhancing drought tolerance, resistance to fusarium wilt and ascochyta blight in chickpea and resistance to foliar diseases in groundnut. These trait-associated robust markers along with other genomic resources including genetic maps and genomic resources will certainly accelerate crop improvement programmes in the SAT legum

Evaluation of clinical effect of <i style="">Panchtikta ghrita</i> in viral hepatitis

502-504HBV infection causes more severe form of illness that includes acute Hepatitis B, chronic hepatitis, progression to cirrhosis, fulminant hepatitis and development to hepatocellular carcinoma. Hepatitis B is caused by HBV infection. An open clinical trial was done in 20 Hep-B positive jaundice patients. Panchtikta ghrita was given in proper doses to all patients registered for trial. All the liver function tests along with clinical symptoms were recorded and assessed before and after treatment. Treatment was given for 3 weeks. The result was analyzed using standard statistical data and showed the encouraging improvement. The details have been described in the paper