Influence of the RNase H domain of retroviral reverse transcriptases on the metal specificity and substrate selection of their polymerase domains

Reverse transcriptases from HIV-1 and MuLV respectively prefer Mg2+ and Mn2+ for their polymerase activity, with variable fidelity, on both RNA and DNA templates. The function of the RNase H domain with respect to these parameters is not yet understood. To evaluate this function, two chimeric enzymes were constructed by swapping the RNase H domains between HIV-1 RT and MuLV RT. Chimeric HIV-1 RT, having the RNase H domain of MuLV RT, inherited the divalent cation preference characteristic of MuLV RT on the DNA template with no significant change on the RNA template. Chimeric MuLV RT, likewise partially inherited the metal ion preference of HIV-1 RT. Unlike the wild-type MuLV RT, chimeric MuLV RT is able to use both Mn.dNTP and Mg.dNTP on the RNA template with similar efficiency, while a 30-fold higher preference for Mn.dNTP was seen on the DNA template. The metal preferences for the RNase H activity of chimeric HIV-1 RT and chimeric MuLV RT were, respectively, Mn2+ and Mg2+, a property acquired through their swapped RNase H domains. Chimeric HIV-1 RT displayed higher fidelity and discrimination against rNTPs than against dNTPs substrates, a property inherited from MuLV RT. The overall fidelity of the chimeric MuLV RT was decreased in comparison to the parental MuLV RT, suggesting that the RNase H domain profoundly influences the function of the polymerase domain

Chemical Radioprotectors

Protection of biological systems against radiation damage is of paramount importance during accidental and unavoidable exposure to radiation. Several physico-chemical and biological factors collectively contribute to the damage caused by radiation and are, therefore, targets for developing radioprotectors. Work on the development of chemicals capable of protecting biological systemsfrom radiation damage was initiated nearly six decades ago with cysteine being the first molecule to be reported. Chemicals capable of scavenging free radicals, inducing oxygen depletion,antioxidants and modulators of immune response have been some of the radioprotectors extensively investigated with limited success. Mechanism of action of some chemical radioprotectors and their combinations have been elucidated, while further understanding is required in many instances. The present review elaborates on structure-activity relationship of some of the chemical radioprotectors, their evaluation, and assessment, limitation, and future prospects

A systematic review of current knowledge of HIV epidemiology and of sexual behaviour in Nepal

OBJECTIVE: To systematically review information on HIV epidemiology and on sexual behaviour in Nepal with a view to identifying gaps in current knowledge. METHODS: Systematic review covering electronic databases, web-based information, personal contact with experts and hand searching of key journals. RESULTS: HIV-1 seroprevalence has been rising rapidly in association with high-risk behaviours, with current levels of 40% amongst the nation's injecting drug users and approaching 20% amongst Kathmandu's female commercial sex workers (FCSWs). HIV seroprevalence remains low in the general population (0.29% of 15–49 year olds). There are significant methodological limitations in many of the seroprevalence studies identified, and these estimates need to be treated with caution. There are extensive migration patterns both within the country and internationally which provide the potential for considerable sexual networking. However, studies of sexual behaviour have focused on FCSWs and the extent of sexual networks within the general population is largely unknown. CONCLUSIONS: Whilst some of the ingredients are present for an explosive HIV epidemic in Nepal, crucial knowledge on sexual behaviour in the general population is missing. Research on sexual networking is urgently required to guide HIV control in Nepal. There is also a need for further good-quality epidemiological studies of HIV seroprevalence

Cellular Automata with Synthetic Image A Secure Image Communication with Transform Domain

    Image encryption has attained a great attention due to the necessity to safeguard confidential images. Digital documents, site images, battlefield photographs, etc. need a secure approach for sharing in an open channel. Hardware – software co-design is a better option for exploiting unique features to cipher the confidential images. Cellular automata (CA) and synthetic image influenced transform domain approach for image encryption is proposed in this paper. The digital image is initially divided into four subsections by applying integer wavelet transform. Confusion is accomplished on low – low section of the transformed image using CA rules 90 and 150. The first level of diffusion with consecutive XORing operation of image pixels is initiated by CA rule 42. A synthetic random key image is developed by extracting true random bits generated by Cyclone V field programmable gate array 5CSEMA5F31C6. This random image plays an important role in second level of diffusion. The proposed confusion and two level diffusion assisted image encryption approach has been validated through the entropy, correlation, histogram, number of pixels change rate, unified average change intensity, contrast and encryption quality analyses

Natural noise and external wake field seeding in a proton-driven plasma accelerator

We discuss the level of natural shot noise in a proton bunch-driven plasma accelerator. The required seeding for the plasma wake field must be larger than the cumulative shot noise. This is the necessary condition for the axial symmetry of the generated wake and the acceleration quality. We develop an analytical theory of the noise field and compare it with multi-dimensional simulations. It appears that the natural noise wake field generated in plasma by the available at CERN super-protons-synchrotron (SPS) bunches is very low, at the level of a few 10 kV/m. This fortunate fact eases the requirements on the seed. Our three dimensional simulations show that even a few tens MeV electron bunch precursor of a very moderate intensity is sufficient to seed the proton bunch self-modulation in plasma.Comment: 5 pages, 5 figure

Spin current in ferromagnet/insulator/superconductor junctions

A theory of spin polarized tunneling spectroscopy based on a scattering theory is given for tunneling junctions between ferromagnets and d-wave superconductors. The spin filtering effect of an exchange field in the insulator is also treated. We clarify that the properties of the Andreev reflection are largely modified due to a presence of an exchange field in the ferromagnets, and consequently the Andreev reflected quasiparticle shows an evanescent-wave behavior depending on the injection angle of the quasiparticle. Conductance formulas for the spin current as well as the charge current are given as a function of the applied voltage and the spin-polarization in the ferromagnet for arbitrary barrier heights. It is shown that the surface bound states do not contribute to the spin current and that the zero-bias conductance peak expected for a d-wave superconductor splits into two peaks under the influence of the exchange interaction in the insulator.Comment: 14 pages, 11 figure

Spin-accumulation and Andreev-reflection in a mesoscopic ferromagnetic wire

The electron transport though ferromagnetic metal-superconducting hybrid devices is considered in the non-equilibrium Green's function formalism in the quasiclassical approximation. Attention if focused on the limit in which the exchange splitting in the ferromagnet is much larger than the superconducting energy gap. Transport properties are then governed by an interplay between spin-accumulation close to the interface and Andreev reflection at the interface. We find that the resistance can either be enhanced or lowered in comparison to the normal case and can have a non-monotonic temperature and voltage dependence. In the non-linear voltage regime electron heating effects may govern the transport properties, leading to qualitative different behaviour than in the absence of heating effects. Recent experimental results on the effect of the superconductor on the conductance of the ferromagnet can be understood by our results for the energy-dependent interface resistance together with effects of spin- accumulation without invoking long range pairing correlations in the ferromagnet.Comment: 15 pages, 12 figures included, submitted to PR