Beyond Inventories: Emergence of a New Era in Rangeland Monitoring

In the absence of technology-driven monitoring platforms, US rangeland policies, management practices, and outcome assessments have been primarily informed by the extrapolation of local information from national-scale rangeland inventories. A persistent monitoring gap between plot-level inventories and the scale at which rangeland assessments are conducted has required decision makers to fill data gaps with statistical extrapolations or assumptions of homogeneity and equilibrium. This gap is now being bridged with spatially comprehensive, annual, rangeland monitoring data across all western US rangelands to as- sess vegetation conditions at a resolution appropriate to inform cross-scale assessments and decisions. In this paper, 20-yr trends in plant functional type cover are presented, confirming two widespread national rangeland resource concerns: widespread increases in annual grass cover and tree cover. Rangeland vegetation monitoring is now available to inform national to regional policies and provide essential data at the scales at which decisions are made and implemented

Spatial Imaging and Screening for Regime Shifts

Screening is a strategy for detecting undesirable change prior to manifestation of symptoms or adverse effects. Although the well-recognized utility of screening makes it commonplace in medicine, it has yet to be implemented in ecosystem management. Ecosystem management is in an era of diagnosis and treatment of undesirable change, and as a result, remains more reactive than proactive and unable to effectively deal with today’s plethora of non-stationary conditions. In this paper, we introduce spatial imaging-based screening to ecology. We link advancements in spatial resilience theory, data, and technological and computational capabilities and power to detect regime shifts (i.e., vegetation state transitions) that are known to be detrimental to human well-being and ecosystem service delivery. With a state-of-the-art landcover dataset and freely available, cloud-based, geospatial computing platform, we screen for spatial signals of the three most iconic vegetation transitions studied in western USA rangelands: (1) erosion and desertification; (2) woody encroachment; and (3) annual exotic grass invasion. For a series of locations that differ in ecological complexity and geographic extent, we answer the following questions: (1) Which regime shift is expected or of greatest concern? (2) Can we detect a signal associated with the expected regime shift? (3) If detected, is the signal transient or persistent over time? (4) If detected and persistent, is the transition signal stationary or non-stationary over time? (5) What other signals do we detect? Our approach reveals a powerful and flexible methodology, whereby professionals can use spatial imaging to verify the occurrence of alternative vegetation regimes, image the spatial boundaries separating regimes, track the magnitude and direction of regime shift signals, differentiate persistent and stationary transition signals that warrant continued screening from more concerning persistent and non-stationary transition signals, and leverage disciplinary strength and resources for more targeted diagnostic testing (e.g., inventory and monitoring) and treatment (e.g., management) of regime shifts. While the rapid screening approach used here can continue to be implemented and refined for rangelands, it has broader implications and can be adapted to other ecological systems to revolutionize the information space needed to better manage critical transitions in nature

Tracking spatial regimes in animal communities: Implications for resilience-based management

Spatial regimes (the spatial extents of ecological states) exhibit strong spatiotemporal order as they expand or contract in response to retreating or encroaching adjacent spatial regimes (e.g., woody plant invasion of grasslands) and human management (e.g., fire treatments). New methods enable tracking spatial regime boundaries via vegetation landcover data, and this approach is being used for strategic management across biomes. A clear advancement would be incorporating animal community data to track spatial regime boundaries alongside vegetation data. In a 41,170-hectare grassland experiencing woody plant encroachment, we test the utility of using animal community data to track spatial regimes via two hypotheses. (H1) Spatial regime boundaries identified via independent vegetation and animal datasets will exhibit spatial synchrony; specifically, grassland:woodland bird community boundaries will synchronize with grass:woody vegetation boundaries. (H2) Negative feedbacks will stabilize spatial regimes identified via animal data; specifically, frequent fire treatments will stabilize grassland bird community boundaries. We used 26 years of bird community and vegetation data alongside 32 years of fire history data. We identified spatial regime boundaries with bird community data via a wombling approach. We identified spatial regime boundaries with vegetation data by calculating spatial covariance between remotely-sensed grass and woody plant cover per pixel. For fire history data, we calculated the cumulative number of fires per pixel. Setting bird boundary strength (wombling R2 values) as the response variable, we tested our hypotheses with a hierarchical generalized additive model (HGAM). Both hypotheses were supported: animal boundaries synchronized with vegetation boundaries in space and time, and grassland bird communities stabilized as fire frequency increased (HGAM explained 38% of deviance). We can now track spatial regimes via animal community data pixel-by-pixel and year-by-year. Alongside vegetation boundary tracking, tracking animal community boundaries can inform the scale of management necessary to maintain animal communities endemic to desirable ecological states. Our approach will be especially useful for conserving animal communities requiring large-scale, unfragmented landscapes—like grasslands and steppes

Tracking spatial regimes in animal communities: Implications for resilience-based management

Spatial regimes (the spatial extents of ecological states) exhibit strong spatiotemporal order as they expand or contract in response to retreating or encroaching adjacent spatial regimes (e.g., woody plant invasion of grasslands) and human management (e.g., fire treatments). New methods enable tracking spatial regime boundaries via vegetation landcover data, and this approach is being used for strategic management across biomes. A clear advancement would be incorporating animal community data to track spatial regime boundaries alongside vegetation data. In a 41,170-hectare grassland experiencing woody plant encroachment, we test the utility of using animal community data to track spatial regimes via two hypotheses. (H1) Spatial regime boundaries identified via independent vegetation and animal datasets will exhibit spatial synchrony; specifically, grassland:woodland bird community boundaries will synchronize with grass:woody vegetation boundaries. (H2) Negative feedbacks will stabilize spatial regimes identified via animal data; specifically, frequent fire treatments will stabilize grassland bird community boundaries. We used 26 years of bird community and vegetation data alongside 32 years of fire history data. We identified spatial regime boundaries with bird community data via a wombling approach. We identified spatial regime boundaries with vegetation data by calculating spatial covariance between remotely-sensed grass and woody plant cover per pixel. For fire history data, we calculated the cumulative number of fires per pixel. Setting bird boundary strength (wombling R2 values) as the response variable, we tested our hypotheses with a hierarchical generalized additive model (HGAM). Both hypotheses were supported: animal boundaries synchronized with vegetation boundaries in space and time, and grassland bird communities stabilized as fire frequency increased (HGAM explained 38% of deviance). We can now track spatial regimes via animal community data pixel-by-pixel and year-by-year. Alongside vegetation boundary tracking, tracking animal community boundaries can inform the scale of management necessary to maintain animal communities endemic to desirable ecological states. Our approach will be especially useful for conserving animal communities requiring large-scale, unfragmented landscapes—like grasslands and steppes

Dark materials: Pre-Columbian black lithic carvings from St Vincent and the wider Caribbean

A small number of pre-Columbian black lithic carvings have been found at archaeological sites across the Caribbean, as well as in parts of neighbouring mainland South America. The identity of the material used to create these artefacts is often unknown, but suggestions include lignite, wood, petrified wood, manja(c)k, jet (or ‘jet-like’ materials) and hardened asphalt. These identifications are often historical and lacking any scientific basis, and as such can be unreliable. However, identification of the material has the potential to inform on the source of the carving and thereby pre-Columbian trade routes within the circum-Caribbean region. Four analytical techniques (reflectance microscopy, FTIR, Py-GC/MS, x-ray fluorescence) were applied to samples taken from two carvings found on St Vincent and five comparative materials. Both artefacts were found to be most likely carved from cannel coal, indicating that they originated in South America (where cannel coal is found extensively in locations in Colombia and Venezuela), as the material is not found within the Caribbean region

Emergency department clinical leads’ experiences of implementing primary care services where GPs work in or alongside emergency departments in the UK: a qualitative study

Background To manage increasing demand for emergency and unscheduled care NHS England policy has promoted services in which patients presenting to Emergency Departments (EDs) with non-urgent problems are directed to general practitioners (GPs) and other primary care clinicians working within or alongside emergency departments. However, the ways that hospitals have implemented primary care services in EDs are varied. The aim of this study was to describe ED clinical leads’ experiences of implementing and delivering ‘primary care services’ and ‘emergency medicine services’ where GPs were integrated into the ED team. Methods We conducted interviews with ED clinical leads in England (n = 19) and Wales (n = 2). We used framework analysis to analyse interview transcripts and explore differences across ‘primary care services’, ‘emergency medicine services’ and emergency departments without primary care services. Results In EDs with separate primary care services, success was reported when having a distinct workforce of primary care clinicians, who improved waiting times and flow by seeing primary care-type patients in a timely way, using fewer investigations, and enabling ED doctors to focus on more acutely unwell patients. Some challenges were: trying to align their service with the policy guidance, inconsistent demand for primary care, accessible community primary care services, difficulties in recruiting GPs, lack of funding, difficulties in agreeing governance protocols and establishing effective streaming pathways. Where GPs were integrated into an ED workforce success was reported as managing the demand for both emergency and primary care and reducing admissions. Conclusions Introducing a policy advocating a preferred model of service to address primary care demand was not useful for all emergency departments. To support successful and sustainable primary care services in or alongside EDs, policy makers and commissioners should consider varied ways that GPs can be employed to manage variation in local demand and also local contextual factors such as the ability to recruit and retain GPs, sustainable funding, clear governance frameworks, training, support and guidance for all staff. Whether or not streaming to a separate primary care service is useful also depended on the level of primary care demand

Spatial Imaging and Screening for Regime Shifts

Screening is a strategy for detecting undesirable change prior to manifestation of symptoms or adverse effects. Although the well-recognized utility of screening makes it commonplace in medicine, it has yet to be implemented in ecosystem management. Ecosystem management is in an era of diagnosis and treatment of undesirable change, and as a result, remains more reactive than proactive and unable to effectively deal with today’s plethora of non-stationary conditions. In this paper, we introduce spatial imaging-based screening to ecology. We link advancements in spatial resilience theory, data, and technological and computational capabilities and power to detect regime shifts (i.e., vegetation state transitions) that are known to be detrimental to human well-being and ecosystem service delivery. With a state-of-the-art landcover dataset and freely available, cloud-based, geospatial computing platform, we screen for spatial signals of the three most iconic vegetation transitions studied in western USA rangelands: (1) erosion and desertification; (2) woody encroachment; and (3) annual exotic grass invasion. For a series of locations that differ in ecological complexity and geographic extent, we answer the following questions: (1) Which regime shift is expected or of greatest concern? (2) Can we detect a signal associated with the expected regime shift? (3) If detected, is the signal transient or persistent over time? (4) If detected and persistent, is the transition signal stationary or non-stationary over time? (5) What other signals do we detect? Our approach reveals a powerful and flexible methodology, whereby professionals can use spatial imaging to verify the occurrence of alternative vegetation regimes, image the spatial boundaries separating regimes, track the magnitude and direction of regime shift signals, differentiate persistent and stationary transition signals that warrant continued screening from more concerning persistent and non-stationary transition signals, and leverage disciplinary strength and resources for more targeted diagnostic testing (e.g., inventory and monitoring) and treatment (e.g., management) of regime shifts. While the rapid screening approach used here can continue to be implemented and refined for rangelands, it has broader implications and can be adapted to other ecological systems to revolutionize the information space needed to better manage critical transitions in nature

How to Train Your CheXDragon: Training Chest X-Ray Models for Transfer to Novel Tasks and Healthcare Systems

Self-supervised learning (SSL) enables label efficient training for machine learning models. This is essential for domains such as medical imaging, where labels are costly and time-consuming to curate. However, the most effective supervised or SSL strategy for transferring models to different healthcare systems or novel tasks is not well understood. In this work, we systematically experiment with a variety of supervised and self-supervised pretraining strategies using multimodal datasets of medical images (chest X-rays) and text (radiology reports). We then evaluate their performance on data from two external institutions with diverse sets of tasks. In addition, we experiment with different transfer learning strategies to effectively adapt these pretrained models to new tasks and healthcare systems. Our empirical results suggest that multimodal SSL gives substantial gains over unimodal SSL in performance across new healthcare systems and tasks, comparable to models pretrained with full supervision. We demonstrate additional performance gains with models further adapted to the new dataset and task, using multimodal domain-adaptive pretraining (DAPT), linear probing then finetuning (LP-FT), and both methods combined. We offer suggestions for alternative models to use in scenarios where not all of these additions are feasible. Our results provide guidance for improving the generalization of medical image interpretation models to new healthcare systems and novel tasks.Comment: 13 pages, 12 figure