54 research outputs found
The scaling behaviour of screened polyelectrolytes
We present a field-theoretic renormalization group (RG) analysis of a single
flexible, screened polyelectrolyte chain (a Debye-H\"uckel chain) in a polar
solvent. We point out that the Debye-H\"uckel chain may be mapped onto a local
field theory which has the same fixed point as a generalised Potts
model. Systematic analysis of the field theory shows that the system is one
with two interplaying length-scales requiring the calculation of scaling
functions as well as exponents to fully describe its physical behaviour. To
illustrate this, we solve the RG equation and explicitly calculate the
exponents and the mean end-to-end length of the chain.Comment: 6 pages, 1 figure; changed title and slight modification to tex
Structure of Polyelectrolytes in Poor Solvent
We present simulations on charged polymers in poor solvent. First we
investigate in detail the dilute concentration range with and without imposed
extension constraints. The resulting necklace polymer conformations are
analyzed in detail. We find strong fluctuations in the number of pearls and
their sizes leading only to small signatures in the form factor and the
force-extension relation. The scaling of the peak in the structure factor with
the monomer density shows a pertinent different behavior from good solvent
chains.Comment: 7 pages, 5 figures. submitted to EP
Counterion Penetration and Effective Electrostatic Interactions in Solutions of Polyelectrolyte Stars and Microgels
Counterion distributions and effective electrostatic interactions between
spherical macroions in polyelectrolyte solutions are calculated via
second-order perturbation (linear response) theory. By modelling the macroions
as continuous charge distributions that are permeable to counterions,
analytical expressions are obtained for counterion profiles and effective pair
interactions in solutions of star-branched and microgel macroions. The
counterions are found to penetrate stars more easily than microgels, with
important implications for screening of bare macroion interactions. The
effective pair interactions are Yukawa in form for separated macroions, but are
softly repulsive and bounded for overlapping macroions. A one-body volume
energy, which depends on the average macroion concentration, emerges naturally
in the theory and contributes to the total free energy.Comment: 15 pages, 5 figure
Dynamics of Collapse of flexible Polyelectrolytes and Polyampholytes
We provide a theory for the dynamics of collapse of strongly charged
polyelectrolytes (PEs) and flexible polyampholytes (PAs) using Langevin
equation. After the initial stage, in which counterions condense onto PE, the
mechanism of approach to the globular state is similar for PE and PA. In both
instances, metastable pearl-necklace structures form in characteristic time
scale that is proportional to N^{4/5} where N is the number of monomers. The
late stage of collapse occurs by merger of clusters with the largest one
growing at the expense of smaller ones (Lifshitz- Slyozov mechanism). The time
scale for this process T_{COLL} N. Simulations are used to support the proposed
collapse mechanism for PA and PE.Comment: 14 pages, 2 figure
Unified Homogenization Theory for Magnetoinductive and Electromagnetic Waves in Split Ring Metamaterials
A unified homogenization procedure for split ring metamaterials taking into
account time and spatial dispersion is introduced. The procedure is based on
two coupled systems of equations. The first one comes from an approximation of
the metamaterial as a cubic arrangement of coupled LC circuits, giving the
relation between currents and local magnetic field. The second equation comes
from macroscopic Maxwell equations, and gives the relation between the
macroscopic magnetic field and the average magnetization of the metamaterial.
It is shown that electromagnetic and magnetoinductive waves propagating in the
metamaterial are obtained from this analysis. Therefore, the proposed time and
spatially dispersive permeability accounts for the characterization of the
complete spectrum of waves of the metamaterial. Finally, it is shown that the
proposed theory is in good quantitative and qualitative agreement with full
wave simulations.Comment: 4 pages, 3 figure
Structure of Metaphase Chromosomes: A Role for Effects of Macromolecular Crowding
In metaphase chromosomes, chromatin is compacted to a concentration of several hundred mg/ml by mechanisms which remain elusive. Effects mediated by the ionic environment are considered most frequently because mono- and di-valent cations cause polynucleosome chains to form compact ∼30-nm diameter fibres in vitro, but this conformation is not detected in chromosomes in situ. A further unconsidered factor is predicted to influence the compaction of chromosomes, namely the forces which arise from crowding by macromolecules in the surrounding cytoplasm whose measured concentration is 100–200 mg/ml. To mimic these conditions, chromosomes were released from mitotic CHO cells in solutions containing an inert volume-occupying macromolecule (8 kDa polyethylene glycol, 10.5 kDa dextran, or 70 kDa Ficoll) in 100 µM K-Hepes buffer, with contaminating cations at only low micromolar concentrations. Optical and electron microscopy showed that these chromosomes conserved their characteristic structure and compaction, and their volume varied inversely with the concentration of a crowding macromolecule. They showed a canonical nucleosomal structure and contained the characteristic proteins topoisomerase IIα and the condensin subunit SMC2. These observations, together with evidence that the cytoplasm is crowded in vivo, suggest that macromolecular crowding effects should be considered a significant and perhaps major factor in compacting chromosomes. This model may explain why ∼30-nm fibres characteristic of cation-mediated compaction are not seen in chromosomes in situ. Considering that crowding by cytoplasmic macromolecules maintains the compaction of bacterial chromosomes and has been proposed to form the liquid crystalline chromosomes of dinoflagellates, a crowded environment may be an essential characteristic of all genomes
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