712 research outputs found
Reversible stochastic pump currents in interacting nanoscale conductors
I argue that the geometric phase, responsible for reversible pump currents in
classical stochastic kinetics, can be observed experimentally with an
electronic setup, similar to the ones reported recently in [Phys. Rev. Lett.
96,076605 (2006)] and [Nature Physics 3, 243 - 247 (2007)]
Current and fluctuation in a two-state stochastic system under non-adiabatic periodic perturbation
We calculate a current and its fluctuation in a two-state stochastic system
under a periodic perturbation. The system could be interpreted as a channel on
a cell surface or a single Michaelis-Menten catalyzing enzyme. It has been
shown that the periodic perturbation induces so-called pump current, and the
pump current and its fluctuation are calculated with the aid of the geometrical
phase interpretation. We give a simple calculation recipe for the statistics of
the current, especially in a non-adiabatic case. The calculation scheme is
based on the non-adiabatic geometrical phase interpretation. Using the Floquet
theory, the total current and its fluctuation are calculated, and it is
revealed that the average of the current shows a stochastic-resonance-like
behavior. In contrast, the fluctuation of the current does not show such
behavior.Comment: 7 pages, 1 figur
Pumping-Restriction Theorem for Stochastic Networks
We formulate an exact result, which we refer to as the pumping restriction
theorem (PRT). It imposes strong restrictions on the currents generated by
periodic driving in a generic dissipative system with detailed balance. Our
theorem unifies previously known results with the new ones and provides a
universal nonperturbative approach to explore further restrictions on the
stochastic pump effect in non-adiabatically driven systems.Comment: 4 pages, 5 figure
A three-dimensional parabolic equation model of sound propagation using higher-order operator splitting and Padé approximants
Author Posting. © Acoustical Society of America, 2012. This article is posted here by permission of Acoustical Society of America for personal use, not for redistribution. The definitive version was published in Journal of the Acoustical Society of America 132 (2012): EL364-EL370, doi:10.1121/1.4754421.An alternating direction implicit (ADI) three-dimensional fluid parabolic equation solution method with enhanced accuracy is presented. The method uses a square-root Helmholtz operator splitting algorithm that retains cross-multiplied operator terms that have been previously neglected. With these higher-order cross terms, the valid angular range of the parabolic equation solution is improved. The method is tested for accuracy against an image solution in an idealized wedge problem. Computational efficiency improvements resulting from the ADI discretization are also discussed.This work was sponsored by the Office of Naval Research under Grant Nos. N00014-10-1-0040 and N00014-11-1-0701
Acoustic multipath arrivals in the horizontal plane due to approaching nonlinear internal waves
Author Posting. © Acoustical Society of America, 2011. This article is posted here by permission of Acoustical Society of America for personal use, not for redistribution. The definitive version was published in Journal of the Acoustical Society of America 129 (2011): EL141-EL147, doi:10.1121/1.3553374.Simultaneous measurements of acoustic wave transmissions and a nonlinear internal wave packet approaching an along-shelf acoustic path during the Shallow Water 2006 experiment are reported. The incoming internal wave packet acts as a moving frontal layer reflecting (or refracting) sound in the horizontal plane. Received acoustic signals are filtered into acoustic normal mode arrivals. It is shown that a horizontal multipath interference is produced. This has previously been called a horizontal Lloyd’s mirror. The interference between the direct path and the refracted path depends on the mode number and frequency of the acoustic signal. A mechanism for the multipath interference is shown. Preliminary modeling results of this dynamic interaction using vertical modes and horizontal parabolic equation models are in good agreement with the observed data
Stochastic Energetics of Quantum Transport
We examine the stochastic energetics of directed quantum transport due to
rectification of non-equilibrium thermal fluctuations. We calculate the quantum
efficiency of a ratchet device both in presence and absence of an external load
to characterize two quantifiers of efficiency. It has been shown that the
quantum current as well as efficiency in absence of load (Stokes efficiency) is
higher as compared to classical current and efficiency, respectively, at low
temperature. The conventional efficiency of the device in presence of load on
the other hand is higher for a classical system in contrast to its classical
counterpart. The maximum conventional efficiency being independent of the
nature of the bath and the potential remains the same for classical and quantum
systems.Comment: To be published in Phys. Rev.
Rate theory for correlated processes: Double-jumps in adatom diffusion
We study the rate of activated motion over multiple barriers, in particular
the correlated double-jump of an adatom diffusing on a missing-row
reconstructed Platinum (110) surface. We develop a Transition Path Theory,
showing that the activation energy is given by the minimum-energy trajectory
which succeeds in the double-jump. We explicitly calculate this trajectory
within an effective-medium molecular dynamics simulation. A cusp in the
acceptance region leads to a sqrt{T} prefactor for the activated rate of
double-jumps. Theory and numerical results agree
Monte Carlo study of Si(111) homoepitaxy
An attempt is made to simulate the homoepitaxial growth of a Si(111) surface
by the kinetic Monte Carlo method in which the standard Solid-on-Solid model
and the planar model of the (7x7) surface reconstruction are used in
combination.
By taking account of surface reconstructions as well as atomic deposition and
migrations, it is shown that the effect of a coorparative stacking
transformation is necessary for a layer growth.Comment: 4 pages, 5 figures. For Fig.1 of this article, please see Fig.2 of
Phys.Rev. B56, 3583 (1997). To appear in Phys.Rev.B. (June 1998
Exact formula for currents in strongly pumped diffusive systems
We analyze a generic model of mesoscopic machines driven by the nonadiabatic
variation of external parameters. We derive a formula for the probability
current; as a consequence we obtain a no-pumping theorem for cyclic processes
satisfying detailed balance and demonstrate that the rectification of current
requires broken spatial symmetry.Comment: 10 pages, accepted for publication in the Journal of Statistical
Physic
Effect of Loading Method on a Peptide Substrate Reporter in Intact Cells [post-print]
Studies of live cells often require loading of exogenous molecules through the cell membrane; however, effects of loading method on experimental results are poorly understood. Therefore, in this work, we compared three methods for loading a fluorescently labeled peptide into cells of the model organism Dictyostelium discoideum. We optimized loading by pinocytosis, electroporation, and myristoylation to maximize cell viability and characterized loading efficiency, localization, and uniformity. We also determined how the loading method affected measurements of enzyme activity on the peptide substrate reporter using capillary electrophoresis. Loading method had a strong effect on the stability and phosphorylation of the peptide. The half-life of the intact peptide in cells was 19 ± 2, 53 ± 15, and 12 ± 1 min, for pinocytosis, electroporation, and myristoylation, respectively. The peptide was phosphorylated only in cells loaded by electroporation. Fluorescence microscopy suggested that the differences between methods were likely due to differences in peptide localization
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