Trophic Structure and Sources of Variation Influencing the Stable Isotope Signatures of Meso- and Bathypelagic Micronekton Fishes

To better understand spatiotemporal variation in the trophic structure of deep-pelagic species, we examined the isotope values of particulate organic matter (POM) (isotopic baseline) and seven deep-pelagic fishes with similar diet compositions but contrasting vertical distributions across mesoscale features in the Gulf of Mexico using stable isotope and amino acid compound-specific isotope analyses. Species examined included four migratory (Benthosema suborbitale, Lepidophanes guentheri, Melamphaes simus, Sigmops elongatus) and three non-migratory zooplanktivorous fishes (Argyropelecus hemigymnus, Cyclothone obscura, Sternoptyx pseudobscura). Isotopic values of POM increased with depth, with meso- and bathypelagic samples characterized by higher δ C and δ N values relative to epipelagic samples. Despite similar diet compositions, mean δ N values of fishes spanned 3.43‰ resulting in mean trophic position estimates among species varying by 1.09 trophic levels. Interspecific differences in δ N were driven by higher δ N values in the non-migratory and deepest dwelling C. obscura (10.61‰) and lower δ N values in the migratory and shallowest dwelling L. guentheri (7.18‰) and B. suborbitale (8.11‰). Similarly, fish δ N values were correlated with depth, with the lowest values occurring in the migratory L. guentheri and B. suborbitale and highest values occurring in the non-migratory C. obscura. Our data suggest that depth-related trends in fish δ N and δ N values are driven by shallower dwelling species feeding within epipelagic food webs supported by POM with lower δ N values, while deeper dwelling, non-migratory species increasingly use food webs at depth supported by POM with elevated δ N values. Horizontal isotopic variation was observed across a large mesoscale oceanographic feature (Loop Current), with POM, three migratory, and one non-migratory species characterized by higher δ C and lower δ N values in the anticyclonic Loop Current relative to surrounding water masses. Our results demonstrate that isotopic values of POM can vary significantly over relatively small horizontal and vertical scales and that baseline variation can be conserved in the signatures of higher-order consumers. By gaining a more thorough understanding of the sources contributing to isotopic variation of deep-pelagic fishes, this paper will inform the design and interpretation of future feeding studies in the pelagic realm and advances our knowledge of deep-pelagic food web structure. 13 15 15 15 15 15 15 15 15 15 15 13 15 sourceAA sourceA

Trophic Ecology of Meso- and Bathypelagic Predatory Fishes in the Gulf of Mexico

The trophic ecology of eight circumglobal meso- and bathypelagic fishes (Anoplogaster cornuta, Chauliodus sloani, Coccorella atlantica, Gigantura chuni, G. indica, Omosudis lowii, Photostomias guernei, and Stomias affinis) with contrasting vertical migration habits (vertical migrators vs. non-migrators) were examined using stable isotope analysis (SIA). Mean δ13C values of these predators were similar among species, ranging from –18.17 to –18.99 ‰, suggesting that all species are supported by a similar carbon source. This finding was supported by mixing-model analysis; all of these deep-living predators received the majority (\u3e73%) of their carbon from epipelagic food resources. Mean δ15N values of the predators ranged from 9.18 to 11.13 ‰, resulting in trophic position estimates between the third and fourth trophic level, although significant shifts in δ15N with increasing body size suggest that some of these species undergo ontogenetic shifts in trophic position. Bayesian standard ellipses, used to estimate isotopic niche areas, differed in size among species, with those occupying the highest relative trophic positions possessing the largest isotopic niches. These results, which provide the first trophic descriptions using dietary tracers for several of these species, offer insight into the trophic structure of deep-sea ecosystems and will help inform the construction of ecosystem-based models

The Application of Novel Research Technologies by the Deep Pelagic Nekton Dynamics of the Gulf of Mexico (DEEPEND) Consortium

The deep waters of the open ocean represent a major frontier in exploration and scientific understanding. However, modern technological and computational tools are making the deep ocean more accessible than ever before by facilitating increasingly sophisticated studies of deep ocean ecosystems. Here, we describe some of the cutting-edge technologies that have been employed by the Deep Pelagic Nekton Dynamics of the Gulf of Mexico (DEEPEND; www.deependconsortium.org) Consortium to study the biodiverse fauna and dynamic physical-chemical environment of the offshore Gulf of Mexico (GoM) from 0 to 1,500 m

Three SRA-Domain Methylcytosine-Binding Proteins Cooperate to Maintain Global CpG Methylation and Epigenetic Silencing in Arabidopsis

Methylcytosine-binding proteins decipher the epigenetic information encoded by DNA methylation and provide a link between DNA methylation, modification of chromatin structure, and gene silencing. VARIANT IN METHYLATION 1 (VIM1) encodes an SRA (SET- and RING-associated) domain methylcytosine-binding protein in Arabidopsis thaliana, and loss of VIM1 function causes centromere DNA hypomethylation and centromeric heterochromatin decondensation in interphase. In the Arabidopsis genome, there are five VIM genes that share very high sequence similarity and encode proteins containing a PHD domain, two RING domains, and an SRA domain. To gain further insight into the function and potential redundancy among the VIM proteins, we investigated strains combining different vim mutations and transgenic vim knock-down lines that down-regulate multiple VIM family genes. The vim1 vim3 double mutant and the transgenic vim knock-down lines showed decreased DNA methylation primarily at CpG sites in genic regions, as well as repeated sequences in heterochromatic regions. In addition, transcriptional silencing was released in these plants at most heterochromatin regions examined. Interestingly, the vim1 vim3 mutant and vim knock-down lines gained ectopic CpHpH methylation in the 5S rRNA genes against a background of CpG hypomethylation. The vim1 vim2 vim3 triple mutant displayed abnormal morphological phenotypes including late flowering, which is associated with DNA hypomethylation of the 5′ region of FWA and release of FWA gene silencing. Our findings demonstrate that VIM1, VIM2, and VIM3 have overlapping functions in maintenance of global CpG methylation and epigenetic transcriptional silencing

A Multidisciplinary Approach to Investigate Deep-Pelagic Ecosystem Dynamics in the Gulf of Mexico Following Deepwater Horizon

The pelagic Gulf of Mexico (GoM) is a complex system of dynamic physical oceanography (western boundary current, mesoscale eddies), high biological diversity, and community integration via diel vertical migration and lateral advection. Humans also heavily utilize this system, including its deep-sea components, for resource extraction, shipping, tourism, and other commercial activity. This utilization has had impacts, some with disastrous consequences. The Deepwater Horizon oil spill (DWHOS) occurred at a depth of ∼1500 m (Macondo wellhead), creating a persistent and toxic mixture of hydrocarbons and dispersant in the deep-pelagic (water column below 200 m depth) habitat. In order to assess the impacts of the DWHOS on this habitat, two large-scale research programs, described herein, were designed and executed. These programs, ONSAP and DEEPEND, aimed to quantitatively characterize the oceanic ecosystem of the northern GoM and to establish a time-series with which natural and anthropogenic changes could be detected. The approach was multi-disciplinary in nature and included in situ sampling, acoustic sensing, water column profiling and sampling, satellite remote sensing, AUV sensing, numerical modeling, genetic sequencing, and biogeochemical analyses. The synergy of these methodologies has provided new and unprecedented perspectives of an oceanic ecosystem with respect to composition, connectivity, drivers, and variability

Identifying therapeutic targets for cancer among 2074 circulating proteins and risk of nine cancers

Circulating proteins can reveal key pathways to cancer and identify therapeutic targets for cancer prevention. We investigate 2,074 circulating proteins and risk of nine common cancers (bladder, breast, endometrium, head and neck, lung, ovary, pancreas, kidney, and malignant non-melanoma) using cis protein Mendelian randomisation and colocalization. We conduct additional analyses to identify adverse side-effects of altering risk proteins and map cancer risk proteins to drug targets. Here we find 40 proteins associated with common cancers, such as PLAUR and risk of breast cancer [odds ratio per standard deviation increment: 2.27, 1.88-2.74], and with high-mortality cancers, such as CTRB1 and pancreatic cancer [0.79, 0.73-0.85]. We also identify potential adverse effects of protein-altering interventions to reduce cancer risk, such as hypertension. Additionally, we report 18 proteins associated with cancer risk that map to existing drugs and 15 that are not currently under clinical investigation. In sum, we identify protein-cancer links that improve our understanding of cancer aetiology. We also demonstrate that the wider consequence of any protein-altering intervention on well-being and morbidity is required to interpret any utility of proteins as potential future targets for therapeutic prevention.</p

Syntactic architecture and its consequences I: Syntax inside the grammar

This volume collects novel contributions to comparative generative linguistics that “rethink” existing approaches to an extensive range of phenomena, domains, and architectural questions in linguistic theory. At the heart of the contributions is the tension between descriptive and explanatory adequacy which has long animated generative linguistics and which continues to grow thanks to the increasing amount and diversity of data available to us. The chapters address research questions on the relation of syntax to other aspects of grammar and linguistics more generally, including studies on language acquisition, variation and change, and syntactic interfaces. Many of these contributions show the influence of research by Ian Roberts and collaborators and give the reader a sense of the lively nature of current discussion of topics in synchronic and diachronic comparative syntax ranging from the core verbal domain to higher, propositional domains. This book is complemented by volume II available at&nbsp;https://langsci-press.org/catalog/book/276 and volume III available at https://langsci-press.org/catalog/book/277

Syntactic architecture and its consequences I: Syntax inside the grammar

This volume collects novel contributions to comparative generative linguistics that “rethink” existing approaches to an extensive range of phenomena, domains, and architectural questions in linguistic theory. At the heart of the contributions is the tension between descriptive and explanatory adequacy which has long animated generative linguistics and which continues to grow thanks to the increasing amount and diversity of data available to us. The chapters address research questions on the relation of syntax to other aspects of grammar and linguistics more generally, including studies on language acquisition, variation and change, and syntactic interfaces. Many of these contributions show the influence of research by Ian Roberts and collaborators and give the reader a sense of the lively nature of current discussion of topics in synchronic and diachronic comparative syntax ranging from the core verbal domain to higher, propositional domains. This book is complemented by volume II available at&nbsp;https://langsci-press.org/catalog/book/276 and volume III available at https://langsci-press.org/catalog/book/277

Syntactic architecture and its consequences I: Syntax inside the grammar

This volume collects novel contributions to comparative generative linguistics that “rethink” existing approaches to an extensive range of phenomena, domains, and architectural questions in linguistic theory. At the heart of the contributions is the tension between descriptive and explanatory adequacy which has long animated generative linguistics and which continues to grow thanks to the increasing amount and diversity of data available to us. The chapters address research questions on the relation of syntax to other aspects of grammar and linguistics more generally, including studies on language acquisition, variation and change, and syntactic interfaces. Many of these contributions show the influence of research by Ian Roberts and collaborators and give the reader a sense of the lively nature of current discussion of topics in synchronic and diachronic comparative syntax ranging from the core verbal domain to higher, propositional domains. This book is complemented by volume II available at&nbsp;https://langsci-press.org/catalog/book/276 and volume III available at https://langsci-press.org/catalog/book/277

Syntactic architecture and its consequences I: Syntax inside the grammar

This volume collects novel contributions to comparative generative linguistics that “rethink” existing approaches to an extensive range of phenomena, domains, and architectural questions in linguistic theory. At the heart of the contributions is the tension between descriptive and explanatory adequacy which has long animated generative linguistics and which continues to grow thanks to the increasing amount and diversity of data available to us. The chapters address research questions on the relation of syntax to other aspects of grammar and linguistics more generally, including studies on language acquisition, variation and change, and syntactic interfaces. Many of these contributions show the influence of research by Ian Roberts and collaborators and give the reader a sense of the lively nature of current discussion of topics in synchronic and diachronic comparative syntax ranging from the core verbal domain to higher, propositional domains. This book is complemented by volume II available at&nbsp;https://langsci-press.org/catalog/book/276 and volume III available at https://langsci-press.org/catalog/book/277