23 research outputs found
MOESM13 of siRNAs regulate DNA methylation and interfere with gene and lncRNA expression in the heterozygous polyploid switchgrass
Additional file 13: Figure S5. Molecular function for genes covered by the CHH DMRs in the GO annotation in gene upstream (a), body (b), and downstream (c). The colored boxes mean the adjust pâ<â0.05, and the more deeper color, the less adjust p values for the boxes
MOESM19 of siRNAs regulate DNA methylation and interfere with gene and lncRNA expression in the heterozygous polyploid switchgrass
Additional file 19: Table S9. Comparison of methylation levels between siRNA uniquely mapping region and without that region
MOESM22 of siRNAs regulate DNA methylation and interfere with gene and lncRNA expression in the heterozygous polyploid switchgrass
Additional file 22: Figure S7. Proportion of six different types of lncRNA in switchgrass
MOESM6 of siRNAs regulate DNA methylation and interfere with gene and lncRNA expression in the heterozygous polyploid switchgrass
Additional file 6: Figure S3. Correlation between genome sizes and methylation levels for different species as Arabidopsis, B. rapa, G. max, M. truncatula, P. trichocarpa, Z. mays, O. sativa, B. distachyum, and P. virgatum (leaf tissue) used in Figure 1e
MOESM12 of siRNAs regulate DNA methylation and interfere with gene and lncRNA expression in the heterozygous polyploid switchgrass
Additional file 12: Data S3 . The methylation levels of 96 genes covered by DMRs and involved in stimulus related GO processes in both leaf and root tissues of switchgrass
MOESM17 of siRNAs regulate DNA methylation and interfere with gene and lncRNA expression in the heterozygous polyploid switchgrass
Additional file 17: Table S8. Regression analysis and 10-fold cross-validation between DNA methylation and gene expression based on zero hurdle model
MOESM24 of siRNAs regulate DNA methylation and interfere with gene and lncRNA expression in the heterozygous polyploid switchgrass
Additional file 24: Table S13. Annotation of targets of miR169 and miR171
MOESM15 of siRNAs regulate DNA methylation and interfere with gene and lncRNA expression in the heterozygous polyploid switchgrass
Additional file 15: Table S6. The number of mRNA and lncRNA in the four expression levels
MOESM25 of siRNAs regulate DNA methylation and interfere with gene and lncRNA expression in the heterozygous polyploid switchgrass
Additional file 25: Table S14. The correlation analysis between methylation levels and lncRNA expression
MOESM18 of siRNAs regulate DNA methylation and interfere with gene and lncRNA expression in the heterozygous polyploid switchgrass
Additional file 18: Table S8. Length distribution of siRNAs (from 20 to 25 nucleotides) in switchgrass for two biological repeats including Alamo_1 (a) and Alamo_2 (b)