46 research outputs found
Preparation of a Water-Based Lubricant from Lignocellulosic Biomass and Its Tribological Properties
Lignocellulosic biomass is considered
as a major feedstock to produce value-added renewable chemicals. In
this study, a new water-based lubricant was prepared using biomass-derived
levulinic acid (LA) and polyols such as ethylene glycol and glycerol.
The products were separated by rotary film molecular distillation
and characterized by <sup>1</sup>H NMR and mass spectrometry. Lubricant
properties such as kinematic viscosity, pour, cloud, and flash points,
copper strip corrosion, and volatility at 120 °C were evaluated
according to standard ASTM methods. Furthermore, the hydrolytic stability
and tribological properties of the products were tested for water-based
lubricants. The results indicated that glycerol ester of levulinic
acid (LAGLE) exhibited superior lubricant properties, strong resistance
to hydrolytic degradation, and excellent antiwear performance, implying
that the biomass-derived LAGLE was a potential water-based lubricant
Rational Design of Methodology-Independent Metal Parameters Using a Nonbonded Dummy Model
A nonbonded
dummy model for metal ions is highly imperative for
the computation of complex biological systems with for instance multiple
metal centers. Here we present nonbonded dummy parameters of 11 divalent
metallic cations, namely, Mg<sup>2+</sup>, V<sup>2+</sup>, Cr<sup>2+</sup>, Mn<sup>2+</sup>, Fe<sup>2+</sup>, Co<sup>2+</sup>, Ni<sup>2+</sup>, Zn<sup>2+</sup>, Cd<sup>2+</sup>, Sn<sup>2+</sup>, and
Hg<sup>2+</sup>, that are optimized to be compatible with three widely
used water models (TIP3P, SPC/E, and TIP4P-EW). The three sets of
metal parameters reproduce simultaneously the solvation free energies
(Δ<i>G</i><sub>sol</sub>), the ion–oxygen distance
in the first solvation shell (IOD), and coordination numbers (CN)
in explicit water with a relative error less than 1%. The main sources
of errors to Δ<i>G</i><sub>sol</sub> that arise from
the boundary conditions and treatment of electrostatic interactions
are corrected rationally, which ensures the independence of the proposed
parameters on the methodology used in the calculation. This work will
be of great value for the computational study of metal-containing
biological systems
Conversion of Ethanol and Acetaldehyde to Butadiene over MgO–SiO<sub>2</sub> Catalysts: Effect of Reaction Parameters and Interaction between MgO and SiO<sub>2</sub> on Catalytic Performance
For
the effect of structural features on the catalytic performance
of the conversion of ethanol and acetaldehyde to butadiene to be investigated,
a series of MgO–SiO<sub>2</sub> catalysts with different structural
properties were synthesized by tuning the calcination temperature,
investigated, and characterized. The best butadiene selectivity of
80.7% appears for the MgO–SiO<sub>2</sub> catalyst calcined
at 500 °C using a mixture
of acetaldehyde/ethanol/water (22.5:67.5:10 wt %) as feed. Addition
of the appropriate amount of water (10 wt %) improved butadiene selectivity
by inhibiting the formation of 1-butanol and C<sub>6</sub> compounds.
Results from XRD, FT-IR, and <sup>29</sup>Si MAS NMR indicate the
generation of a significant amount of amorphous magnesium silicates
along with few crystalline magnesium silicates for the catalyst calcined
at 500 °C. XPS results indicate that it contains the lowest binding
energies of both Si–O and Mg–O from Si–O–Mg
bonds. For the catalysts calcined at low temperature (350 and 400
°C), more 1-butanol and C<sub>6</sub> compounds formed, which
are considered to be related to residual Mg(NO<sub>3</sub>)<sub>2</sub>. Additionally, more ethylene, diethyl ether, and butylene isomers
were produced over the MgO–SiO<sub>2</sub> catalyst calcined
at 700 °C with the formation of forsterite Mg<sub>2</sub>SiO<sub>4</sub>. Further results from Fourier transform infrared spectroscopy
after pyridine adsorption and CO<sub>2</sub> temperature-programmed
desorption show that the high catalytic performance is related to
the presence of Lewis acidic sites and an intermediate number of basic
sites
Generalized Born and Explicit Solvent Models for Free Energy Calculations in Organic Solvents: Cyclodextrin Dimerization
Evaluation
of solvation (binding) free energies with implicit solvent models
in different dielectric environments for biological simulations as
well as high throughput ligand screening remain challenging endeavors.
In order to address how well implicit solvent models approximate explicit
ones we examined four generalized Born models (<i>GB</i><sup>Still</sup>, <i>GB</i><sup>HCT</sup>, <i>GB</i><sup>OBC</sup><i>I</i>, and <i>GB</i><sup>OBC</sup><i>II</i>) for determining the dimerization free energy
(Δ<i>G</i><sup>0</sup>) of β-cyclodextrin monomers
in 17 implicit solvents with dielectric constants (<i>D</i>) ranging from 5 to 80 and compared the results to previous free
energy calculations with explicit solvents (Zhang et al. J. Phys. Chem. B 2012, 116, 12684−12693). The comparison indicates that neglecting
the environmental dependence of Born radii appears acceptable for
such calculations involving cyclodextrin and that the <i>GB</i><sup>Still</sup> and <i>GB</i><sup>OBC</sup><i>I</i> models yield a reasonable estimation of Δ<i>G</i><sup>0</sup>, although the details of binding are quite different
from explicit solvents. Large discrepancies between implicit and explicit
solvent models occur in high-dielectric media with strong hydrogen
bond (HB) interruption properties. Δ<i>G</i><sup>0</sup> with the GB models is shown to correlate strongly to 2(<i>D</i>–1)/(2<i>D</i>+1) (<i>R</i><sup>2</sup> ∼ 0.90) in line with the Onsager reaction field (Onsager J. Am. Chem. Soc. 1936, 58, 1486−1493) but to be very sensitive to <i>D</i> (<i>D</i> < 10) as well. Both high-dielectric environments
where hydrogen bonds are of interest and low-dielectric media such
as protein binding pockets and membrane interiors therefore need to
be considered with caution in GB-based calculations. Finally, a literature
analysis of Gibbs energy of solvation of small molecules in organic
liquids shows that the Onsager relation does not hold for real molecules
since the correlation between Δ<i>G</i><sup>0</sup> and 2(<i>D</i>–1)/(2<i>D</i>+1) is low
for most solutes. Interestingly, explicit solvent calculations of
the solvation free energy (Zhang
et al. J. Chem. Inf. Model. 2015, 55, 1192−1201) reproduce the weak experimental correlations with 2(<i>D</i>–1)/(2<i>D</i>+1) very well
Modeling Coordination-Directed Self-Assembly of M<sub>2</sub>L<sub>4</sub> Nanocapsule Featuring Competitive Guest Encapsulation
Exploring the mechanism of self-assembly
and guest encapsulation
of nanocapsules is highly imperative for the design of sophisticated
molecular containers and multistimuli-responsive functional materials.
Here we present a molecular dynamics simulation protocol with implicit
solvent and simulated annealing techniques to investigate the self-assembly
and competitive guest (C<sub>60</sub> and C<sub>70</sub> fullerenes)
encapsulation of a M<sub>2</sub>L<sub>4</sub> nanocapsule that is
self-assembled by the coordination of mercury cations and bent bidentate
ligands. Stepwise formation of the nanocapsule and competitive fullerene
encapsulation during dynamic structural changes in the self-assembly
were detected successfully. Such processes were driven by coordination
bonding and π–π stacking and obey the minimum total
potential energy principle. Potential of mean force calculations for
guest binding to the M<sub>2</sub>L<sub>4</sub> nanocapsule explained
the mechanism underlying the competitive encapsulations of C<sub>60</sub> and C<sub>70</sub>. This work helps design new functional nanomaterials
capable of guest encapsulation and release
Mixed Matrix Membrane Based on Cross-Linked Poly[(ethylene glycol) methacrylate] and Metal–Organic Framework for Efficient Separation of Carbon Dioxide and Methane
The
key in preparing mixed matrix membranes for the desired gas
separation is to rationally select a suitable combination of inorganic
fillers and polymers and to develop fabrication techniques enabling
formation of a continuous inorganic phase with dual transport pathway.
Herein, we report the facile design of flexible poly[poly(ethylene
glycol) methacrylate-<i>co</i>-poly(ethylene glycol) dimethacrylate]
membranes containing metal organic frameworks UiO-66 prepared from
zirconium chloride and 2-aminoterephthalic and terephthalic acid varying
in contents, shapes, and sizes. The surface chemistry effects of both
polymer matrix and MOFs on permeability and selectivity were investigated.
The bare polymer membrane exhibited a permeability for CO<sub>2</sub> of around 117 barrer and a selectivity of up to 15. Addition of
glycidyl methacrylate in the polymerization mixture led to membranes
that were modified with hexamethylenediamine to provide for
basicity. However, this modification did not improve performance of
the membranes. In contrast, addition 35 wt % UiO-66 octahedron enhanced
both permeability and selectivity for CO<sub>2</sub> to about 205
barrer and 19, respectively. By adjusting the size and shape of UiO-66,
the best hybrid membrane containing 35 wt % clusters of aggregated
UiO-66 formed a close to continuous phase desirable for the dual transport
mechanism and exhibited a 247% increase in CO<sub>2</sub> permeability
up to 365 barrer
Quantification of Solvent Contribution to the Stability of Noncovalent Complexes
We
introduce an indirect approach to estimate the solvation contributions
to the thermodynamics of noncovalent complex formation through molecular
dynamics simulation. This estimation is demonstrated by potential
of mean force and entropy calculations on the binding process between
β-cyclodextrin (host) and four drug molecules puerarin, daidzin,
daidzein, and nabumetone (guest) in explicit water, followed by a
stepwise extraction of individual enthalpy (Δ<i>H</i>) and entropy (Δ<i>S</i>) terms from the total free
energy. Detailed analysis on the energetics of the host–guest
complexation demonstrates that flexibility of the binding partners
and solvation-related Δ<i>H</i> and Δ<i>S</i> need to be included explicitly for accurate estimation
of the binding thermodynamics. From this, and our previous work on
the solvent dependency of binding energies (Zhang et al. <i>J.
Phys. Chem. B</i> <b>2012</b>, <i>116</i>, 12684–12693),
it follows that calculations neglecting host or guest flexibility,
or those employing implicit solvent, will not be able to systematically
predict binding free energies. The approach presented here can be
readily adopted for obtaining a deeper understanding of the mechanisms
governing noncovalent associations in solution
High-Quality Jet Fuel Blend Production by Oxygen-Containing Terpenoids Hydroprocessing
Biojet
fuel production has attracted a lot of research interest
due to the double threats of fuel shortage and environmental concerns.
This paper works on the high-quality jet fuel blend production by
oxygen-containing terpenoids hydroprocessing. Hydroprocessing of three
typical oxygen-containing terpenoids (geranyl acetone, nerolidol,
and geraniol) over Pt/Al<sub>2</sub>O<sub>3</sub> was first studied.
The results indicate that the coexistence of branched carbon backbone,
carbon–carbon double bond, and oxygen-containing functional
group makes the terpenoids highly reactive during the hydroprocessing.
The Pt/Al<sub>2</sub>O<sub>3</sub> catalyst, which is considered to
have a mild acidity, is still too active in terpenoids hydrogenation
and results in large heat release and extensive side reactions. Hence,
Pt supported on a support with a milder acidity and better diffusion
property was proposed to build a suitable terpenoids hydroprocessing
catalyst. Pt/Al-MCFs (MCF: mesocellular silica foam) were then successfully
prepared, characterized, and tested in this reaction. Acidic sites
could be introduced into MCFs by Al grafting of the pure silica MCF.
The acidities of MCF supports, and consequently Pt/MCFs, could be
fine-tuned by the Si/Al ratio in the resulting supports. Pt/Al-MCF-20
with a milder acidity than Pt/Al<sub>2</sub>O<sub>3</sub> shows an
excellent performance in geranyl acetone hydroprocessing with complete
deoxygenation, limited side reaction, and high stability. Characterization
results of Pt/Al-MCFs and Pt/MCF indicate that Al introduction is
critical for the stable performance. The products obtained from geranyl
acetone hydroprocessing over Pt/Al-MCF-20 are highly promising as
jet fuel or jet fuel blend due to their multibranched alkane and alkyl-cycloalkane
nature, which meets all the specifications of ASTM 7566 in the desired
freezing point (−72 °C), density (0.80 g/mL), flash point
(51 °C), heat of combustion (45 MJ/kg), and aromatics content
(<1%)
Atomistic Simulation of Protein Encapsulation in Metal–Organic Frameworks
Fabrication of metal–organic
frameworks (MOFs) with large
apertures triggers a brand-new research area for selective encapsulation
of biomolecules within MOF nanopores. The underlying inclusion mechanism
is yet to be clarified however. Here we report a molecular dynamics
study on the mechanism of protein encapsulation in MOFs. Evaluation
for the binding of amino acid side chain analogues reveals that van
der Waals interaction is the main driving force for the binding and
that guest size acts as a key factor predicting protein binding with
MOFs. Analysis on the conformation and thermodynamic stability of
the miniprotein Trp-cage encapsulated in a series of MOFs with varying
pore apertures and surface chemistries indicates that protein encapsulation
can be achieved via maintaining a polar/nonpolar balance in the MOF
surface through tunable modification of organic linkers and Mg–O
chelating moieties. Such modifications endow MOFs with a more biocompatible
confinement. This work provides guidelines for selective inclusion
of biomolecules within MOFs and facilitates MOF functions as a new
class of host materials and molecular chaperones
Molecular Recognition in Different Environments: β‑Cyclodextrin Dimer Formation in Organic Solvents
Electrostatic and van der Waals interactions as well
as entropy
contribute to the energetics governing macromolecular complexation
in biomolecules. Hydrogen bonds play a particularly important role
in such interactions. Here we use molecular dynamics (MD) simulations
to investigate the hydrogen bond (HB) orientations of free beta-cyclodextrin
(β-CD) and head-to-head dimerization of β-CD monomers
with and without guest molecules in different environments, namely,
in 10 different solvents covering a wide range of polarity. Potentials
of mean force for the dimer dissociation are derived from umbrella
sampling simulations, allowing determination of the binding affinity
between monomers. The HB orientations are in good agreement with available
experimental data in water and dimethyl sulfoxide, yielding confidence
in the force field used. HB exchanges at the secondary rim of β-CD
are observed with a fast rate in water and with a low rate or even
no exchange in other solvents. Orientational preferences of interglucopyranose
HBs and their effects on the β-CD structure in these solvents
are discussed in detail. Polar solvents with stronger HB accepting
abilities can interrupt intermolecular HBs more easily, resulting
in a less stable dimer. Guest molecules included in the channel-type
cavity strengthen the binding affinity between two monomers to some
extent, particularly in polar solvents. Formation of the head-to-head
dimer is therefore solvent-dependent and guest-modulated. There is
only limited correlation between the dimer binding energies and solvent
properties like the dielectric constant. This implies that implicit
solvent models will not be capable of predicting important properties
like binding energy for other solvents than water without a complete
reparameterization. This work provides a deeper comprehension on the
properties of β-CD, and implications for the application of
cyclodextrins in aqueous and nonaqueous media are discussed