17 research outputs found
Table2_Immunogenic cell death-related gene landscape predicts the overall survival and immune infiltration status of ovarian cancer.DOCX
Background: Ovarian cancer (OC) is the most troubling malignant tumor of the female reproductive system. It has a low early diagnosis rate and a high tumor recurrence rate after treatment. Immunogenic cell death (ICD) is a unique form of regulated cell death that can activate the adaptive immune system through the release of DAMPs and cytokines in immunocompromised hosts and establish long-term immunologic memory. Therefore, this study aims to explore the prognostic value and underlying mechanisms of ICD-related genes in OC on the basis of characteristics.Methods: The gene expression profiles and related clinical information of OC were downloaded from The Cancer Genome Atlas (TCGA) and Gene Expression Omnibus (GEO) database. ICD-related genes were collected from the Genecards database. ICD-related prognostic genes were obtained by intersecting ICD-related genes with the OC prognostic-related genes that were analyzed in the TCGA database. Functional enrichment, genetic mutation, and immune infiltration correlation analyses were further performed to identify underlying mechanisms. Subsequently, we developed a TCGA cohort-based prognostic risk model that included a nine-gene signature through univariate and multivariate Cox regression and LASSO regression analyses. Meanwhile, external validation was performed on two sets of GEO cohorts and the TCGA training cohort for three other common tumors in women. In addition, a nomogram was established by integrating clinicopathological features and ICD-related gene signature to predict survival probability. Finally, functional enrichment and immune infiltration analyses were performed on the two risk subgroups.Results: By utilizing nine genes (ERBB2, RB1, CCR7, CD38, IFNB1, ANXA2, CXCL9, SLC9A1, and SLAMF7), we constructed an ICD-related prognostic signature. Subsequently, patients were subdivided into high- and low-risk subgroups in accordance with the median value of the risk score. In multivariate Cox regression analyses, risk score was an independent prognostic factor (hazard ratio = 2.783; p Conclusion: We constructed a novel ICD-related gene model for forecasting the prognosis and immune infiltration status of patients with OC. In the future, new ICD-related genes may provide novel potential targets for the therapeutic intervention of OC.</p
Table3_Immunogenic cell death-related gene landscape predicts the overall survival and immune infiltration status of ovarian cancer.DOCX
Background: Ovarian cancer (OC) is the most troubling malignant tumor of the female reproductive system. It has a low early diagnosis rate and a high tumor recurrence rate after treatment. Immunogenic cell death (ICD) is a unique form of regulated cell death that can activate the adaptive immune system through the release of DAMPs and cytokines in immunocompromised hosts and establish long-term immunologic memory. Therefore, this study aims to explore the prognostic value and underlying mechanisms of ICD-related genes in OC on the basis of characteristics.Methods: The gene expression profiles and related clinical information of OC were downloaded from The Cancer Genome Atlas (TCGA) and Gene Expression Omnibus (GEO) database. ICD-related genes were collected from the Genecards database. ICD-related prognostic genes were obtained by intersecting ICD-related genes with the OC prognostic-related genes that were analyzed in the TCGA database. Functional enrichment, genetic mutation, and immune infiltration correlation analyses were further performed to identify underlying mechanisms. Subsequently, we developed a TCGA cohort-based prognostic risk model that included a nine-gene signature through univariate and multivariate Cox regression and LASSO regression analyses. Meanwhile, external validation was performed on two sets of GEO cohorts and the TCGA training cohort for three other common tumors in women. In addition, a nomogram was established by integrating clinicopathological features and ICD-related gene signature to predict survival probability. Finally, functional enrichment and immune infiltration analyses were performed on the two risk subgroups.Results: By utilizing nine genes (ERBB2, RB1, CCR7, CD38, IFNB1, ANXA2, CXCL9, SLC9A1, and SLAMF7), we constructed an ICD-related prognostic signature. Subsequently, patients were subdivided into high- and low-risk subgroups in accordance with the median value of the risk score. In multivariate Cox regression analyses, risk score was an independent prognostic factor (hazard ratio = 2.783; p Conclusion: We constructed a novel ICD-related gene model for forecasting the prognosis and immune infiltration status of patients with OC. In the future, new ICD-related genes may provide novel potential targets for the therapeutic intervention of OC.</p
Table1_Immunogenic cell death-related gene landscape predicts the overall survival and immune infiltration status of ovarian cancer.XLSX
Background: Ovarian cancer (OC) is the most troubling malignant tumor of the female reproductive system. It has a low early diagnosis rate and a high tumor recurrence rate after treatment. Immunogenic cell death (ICD) is a unique form of regulated cell death that can activate the adaptive immune system through the release of DAMPs and cytokines in immunocompromised hosts and establish long-term immunologic memory. Therefore, this study aims to explore the prognostic value and underlying mechanisms of ICD-related genes in OC on the basis of characteristics.Methods: The gene expression profiles and related clinical information of OC were downloaded from The Cancer Genome Atlas (TCGA) and Gene Expression Omnibus (GEO) database. ICD-related genes were collected from the Genecards database. ICD-related prognostic genes were obtained by intersecting ICD-related genes with the OC prognostic-related genes that were analyzed in the TCGA database. Functional enrichment, genetic mutation, and immune infiltration correlation analyses were further performed to identify underlying mechanisms. Subsequently, we developed a TCGA cohort-based prognostic risk model that included a nine-gene signature through univariate and multivariate Cox regression and LASSO regression analyses. Meanwhile, external validation was performed on two sets of GEO cohorts and the TCGA training cohort for three other common tumors in women. In addition, a nomogram was established by integrating clinicopathological features and ICD-related gene signature to predict survival probability. Finally, functional enrichment and immune infiltration analyses were performed on the two risk subgroups.Results: By utilizing nine genes (ERBB2, RB1, CCR7, CD38, IFNB1, ANXA2, CXCL9, SLC9A1, and SLAMF7), we constructed an ICD-related prognostic signature. Subsequently, patients were subdivided into high- and low-risk subgroups in accordance with the median value of the risk score. In multivariate Cox regression analyses, risk score was an independent prognostic factor (hazard ratio = 2.783; p Conclusion: We constructed a novel ICD-related gene model for forecasting the prognosis and immune infiltration status of patients with OC. In the future, new ICD-related genes may provide novel potential targets for the therapeutic intervention of OC.</p
Origin of Water-Induced Fluorescence Turn-On from a Schiff Base Compound: AIE or HâBonding Promoted ESIPT?
A nonfluorescent Schiff base compound
(<b>4)</b> in an aprotic
solvent (e.g., CH<sub>3</sub>CN) is found to give blue fluorescence
turn-on (Îť<sub>em</sub> â 475 nm) upon addition of H<sub>2</sub>O. By using a wide range of spectroscopic methods, including <sup>1</sup>H NMR and dynamic light scattering, the fluorescence response
is shown to be not originating from the molecular aggregation-induced
emission (AIE). Spectroscopic studies at low temperatures further
reveal a dynamic response of <b>4</b> to temperature, showing
that the excited state intramolecular proton transfer (ESIPT) can
be ON or OFF through interaction with protic solvent. In the binary
solvent (with composition CH<sub>3</sub>CN/H<sub>2</sub><i>O</i> = 3:1), the Schiff base gives ESIPT emission (Îť<sub>em</sub> â 524 nm) only at extremely low temperature (below â80
°C), which is turned off when being warmed to â60 °C,
attributing to the increasing photoinduced electron transfer (PET)
effect. When the temperature is further raised to â20 °C,
ESIPT emission is reactivated to give blue emission (Îť<sub>em</sub> â 475 nm) that is observed at room temperature. The observed
dynamic fluorescence response reveals that ESIPT could be a predominant
mechanism in the fluorescence turn-on of Schiff base compounds, although
both AIE and ESIPT mechanisms could operate. The assumption is further
verified by examining the response of Schiff base to Al<sup>3+</sup> cation
Self-Assembly of Polyoxovanadate-Containing Fluorosurfactants
Two
novel polyoxovanadate (POV)-containing fluorosurfactants, each
with two hydrophobic fluorinated âtailsâ and one nanosized,
hydrophilic, rigid POV âhead groupâ, are synthesized
for the first time. They self-assemble into spherical, bilayer vesicles
in acetonitrile/water mixed solvents, as evidenced by systemic studies
using laser light scattering (LLS) and electron microscopy techniques.
The vesicle sizes demonstrate dynamic change over different solvent
compositions mainly as a result of the solvent swelling of the fluorocarbon
chains, although the charge number on the POVs changes over the solvent
polarity as well
A Library of Thermoresponsive, Coacervate-Forming Biodegradable Polyesters
We report on a new class of thermoresponsive
biodegradable polyesters (TR-PE) inspired by polyacrylamides and elastin-like proteins (ELPs). The polyesters
display reversible phase transition with tunable cloud point temperatures
(<i>T</i><sub>cp</sub>) in aqueous solution as evidenced
by UVâvis spectroscopy, <sup>1</sup>H NMR, and DLS measurements.
These polyesters form coacervate droplets above their lower critical
solution temperature (LCST). The <i>T</i><sub>cp</sub> of
the polyesters is influenced by the solutes such as urea, SDS, and
NaCl. The <i>T</i><sub>cp</sub> of the copolymers shows
a linear correlation with the composition of the polyesters indicating
the ability to tune the phase change temperature. We also show that
such thermoresponsive coacervates are capable of encapsulating small
molecules such as Nile Red. Furthermore, the polyesters are hydrolytically
degradable
Strong Co-Ion Effect via CationâĎ Interaction on the Self-Assembly of MetalâOrganic Cationic Macrocycles
The predesigned metalâorganic
macrocycle Zn<sub>3</sub>QDB<sub>3</sub>(NO<sub>3</sub>)<sub>4</sub> (Zn-QDB) was observed to self-assemble
into a hollow, spherical, single-layered âblackberryâ-type
structure. The self-assembly behaviors of the Zn-QDB are significantly
influenced by additional small ions. Specifically, the cations exhibit
strong co-ion effects on the interaction between cationic macrocycles
which are different from the previously reported co-ion effects of
simple anions on anionic polyoxometalates. This unusual phenomenon
is due to the unique cationâĎ interaction between small
cations and electron-rich cavity of Zn-QDB, as confirmed by UVâvis, <sup>1</sup>H NMR, and fluorescence spectra. The variation of hydrodynamic
radius (<i>R</i><sub>h</sub>) of assemblies with the changes
of solution ionic strength and the type of cations reveals the competition
between counterion-mediated attraction and cationâĎ interaction
during the self-assembly process. Furthermore, the cooperativity of
cationâĎ interaction and ĎâĎ stacking
play a vital role in enhancing the stability of the supramolecular
structure
Exploring the Programmable Assembly of a PolyoxometalateâOrganic Hybrid via Metal Ion Coordination
The conformational flexibility and
programmed assembly of a dumbbell-shaped
polyoxometalateâorganic hybrid molecule comprising two Dawson-type
polyoxometalates linked by a 2,2â˛-bipyridine unit, which can
be coordinate to metal ions, in this case of Zn<sup>2+</sup>, are
described. SAXS, UV/vis, and NMR spectroscopic techniques confirm
that the hybrid molecules exist as the <i>trans</i> dumbbell
in metal-ion-free solutions and can be reversibly transformed into
the <i>cis</i> dumbbell through coordination upon the addition
of ZnCl<sub>2</sub> into a DMSO solution containing the hybrid. Subsequent
addition of EDTA reverses the switching process by extracting the
Zn<sup>2+</sup> cations from the hybrid. During the interchange process
between <i>trans</i> and <i>cis</i> dumbbells,
a further reorganization of the hybrid molecules occurs through bond
rotation to minimize steric clashes between the polyoxometalate subunits,
in order to stabilize the corresponding dumbbell conformation. The
Zn<sup>2+</sup>-controlled conformational transformation of the hybrid
can be further utilized to manipulate the hybridâs solvophobic
interaction-driven self-assembly behavior in the metal-ion driven
reversible formation of 140 nm sized vesicles, studied by laser light
scattering techniques
Exploring the Programmable Assembly of a PolyoxometalateâOrganic Hybrid via Metal Ion Coordination
The conformational flexibility and
programmed assembly of a dumbbell-shaped
polyoxometalateâorganic hybrid molecule comprising two Dawson-type
polyoxometalates linked by a 2,2â˛-bipyridine unit, which can
be coordinate to metal ions, in this case of Zn<sup>2+</sup>, are
described. SAXS, UV/vis, and NMR spectroscopic techniques confirm
that the hybrid molecules exist as the <i>trans</i> dumbbell
in metal-ion-free solutions and can be reversibly transformed into
the <i>cis</i> dumbbell through coordination upon the addition
of ZnCl<sub>2</sub> into a DMSO solution containing the hybrid. Subsequent
addition of EDTA reverses the switching process by extracting the
Zn<sup>2+</sup> cations from the hybrid. During the interchange process
between <i>trans</i> and <i>cis</i> dumbbells,
a further reorganization of the hybrid molecules occurs through bond
rotation to minimize steric clashes between the polyoxometalate subunits,
in order to stabilize the corresponding dumbbell conformation. The
Zn<sup>2+</sup>-controlled conformational transformation of the hybrid
can be further utilized to manipulate the hybridâs solvophobic
interaction-driven self-assembly behavior in the metal-ion driven
reversible formation of 140 nm sized vesicles, studied by laser light
scattering techniques
Exploring the Programmable Assembly of a PolyoxometalateâOrganic Hybrid via Metal Ion Coordination
The conformational flexibility and
programmed assembly of a dumbbell-shaped
polyoxometalateâorganic hybrid molecule comprising two Dawson-type
polyoxometalates linked by a 2,2â˛-bipyridine unit, which can
be coordinate to metal ions, in this case of Zn<sup>2+</sup>, are
described. SAXS, UV/vis, and NMR spectroscopic techniques confirm
that the hybrid molecules exist as the <i>trans</i> dumbbell
in metal-ion-free solutions and can be reversibly transformed into
the <i>cis</i> dumbbell through coordination upon the addition
of ZnCl<sub>2</sub> into a DMSO solution containing the hybrid. Subsequent
addition of EDTA reverses the switching process by extracting the
Zn<sup>2+</sup> cations from the hybrid. During the interchange process
between <i>trans</i> and <i>cis</i> dumbbells,
a further reorganization of the hybrid molecules occurs through bond
rotation to minimize steric clashes between the polyoxometalate subunits,
in order to stabilize the corresponding dumbbell conformation. The
Zn<sup>2+</sup>-controlled conformational transformation of the hybrid
can be further utilized to manipulate the hybridâs solvophobic
interaction-driven self-assembly behavior in the metal-ion driven
reversible formation of 140 nm sized vesicles, studied by laser light
scattering techniques