4,999 research outputs found
Molecular and fossil evidence place the origin of cichlid fishes long after Gondwanan rifting.
Cichlid fishes are a key model system in the study of adaptive radiation, speciation and evolutionary developmental biology. More than 1600 cichlid species inhabit freshwater and marginal marine environments across several southern landmasses. This distributional pattern, combined with parallels between cichlid phylogeny and sequences of Mesozoic continental rifting, has led to the widely accepted hypothesis that cichlids are an ancient group whose major biogeographic patterns arose from Gondwanan vicariance. Although the Early Cretaceous (ca 135 Ma) divergence of living cichlids demanded by the vicariance model now represents a key calibration for teleost molecular clocks, this putative split pre-dates the oldest cichlid fossils by nearly 90 Myr. Here, we provide independent palaeontological and relaxed-molecular-clock estimates for the time of cichlid origin that collectively reject the antiquity of the group required by the Gondwanan vicariance scenario. The distribution of cichlid fossil horizons, the age of stratigraphically consistent outgroup lineages to cichlids and relaxed-clock analysis of a DNA sequence dataset consisting of 10 nuclear genes all deliver overlapping estimates for crown cichlid origin centred on the Palaeocene (ca 65-57 Ma), substantially post-dating the tectonic fragmentation of Gondwana. Our results provide a revised macroevolutionary time scale for cichlids, imply a role for dispersal in generating the observed geographical distribution of this important model clade and add to a growing debate that questions the dominance of the vicariance paradigm of historical biogeography
Quasi-Chemical and Structural Analysis of Polarizable Anion Hydration
Quasi-chemical theory is utilized to analyze the roles of solute polarization
and size in determining the structure and thermodynamics of bulk anion
hydration for the Hofmeister series Cl, Br, and I. Excellent
agreement with experiment is obtained for whole salt hydration free energies
using the polarizable AMOEBA force field. The quasi-chemical approach exactly
partitions the solvation free energy into inner-shell, outer-shell packing, and
outer-shell long-ranged contributions by means of a hard-sphere condition.
Small conditioning radii, even well inside the first maximum of the
ion-water(oxygen) radial distribution function, result in Gaussian behavior for
the long-ranged contribution that dominates the ion hydration free energy. The
spatial partitioning allows for a mean-field treatment of the long-ranged
contribution, leading to a natural division into first-order electrostatic,
induction, and van der Waals terms. The induction piece exhibits the strongest
ion polarizability dependence, while the larger-magnitude first-order
electrostatic piece yields an opposing but weaker polarizability dependence. In
addition, a structural analysis is performed to examine the solvation
anisotropy around the anions. As opposed to the hydration free energies, the
solvation anisotropy depends more on ion polarizability than on ion size:
increased polarizability leads to increased anisotropy. The water dipole
moments near the ion are similar in magnitude to bulk water, while the ion
dipole moments are found to be significantly larger than those observed in
quantum mechanical studies. Possible impacts of the observed over-polarization
of the ions on simulated anion surface segregation are discussed.Comment: slight revision, in press at J. Chem. Phy
Radiation of Angular Momentum by Neutrinos from Merged Binary Neutron Stars
We study neutrino emission from the remnant of an inspiraling binary neutron
star following coalescence. The mass of the merged remnant is likely to exceed
the stability limit of a cold, rotating neutron star. However, the angular
momentum of the remnant may also approach or even exceed the Kerr limit, J/M^2
= 1, so that total collapse may not be possible unless some angular momentum is
dissipated. We find that neutrino emission is very inefficient in decreasing
the angular momentum of these merged objects and may even lead to a small
increase in J/M^2. We illustrate these findings with a post-Newtonian,
ellipsoidal model calculation. Simple arguments suggest that the remnant may
form a bar mode instability on a timescale similar to or shorter than the
neutrino emission timescale, in which case the evolution of the remnant will be
dominated by the emission of gravitational waves.Comment: 12 pages AASTeX, 2 figures, to appear in Ap
Phylogenetic informativeness reconciles ray-finned fish molecular divergence times
BACKGROUND: Discordance among individual molecular age estimates, or between molecular age estimates and the fossil record, is observed in many clades across the Tree of Life. This discordance is attributed to a variety of variables including calibration age uncertainty, calibration placement, nucleotide substitution rate heterogeneity, or the specified molecular clock model. However, the impact of changes in phylogenetic informativeness of individual genes over time on phylogenetic inferences is rarely analyzed. Using nuclear and mitochondrial sequence data for ray-finned fishes (Actinopterygii) as an example, we extend the utility of phylogenetic informativeness profiles to predict the time intervals when nucleotide substitution saturation results in discordance among molecular ages estimated. RESULTS: We demonstrate that even with identical calibration regimes and molecular clock methods, mitochondrial based molecular age estimates are systematically older than those estimated from nuclear sequences. This discordance is most severe for highly nested nodes corresponding to more recent (i.e., Jurassic-Recent) divergences. By removing data deemed saturated, we reconcile the competing age estimates and highlight that the older mtDNA based ages were driven by nucleotide saturation. CONCLUSIONS: Homoplasious site patterns in a DNA sequence alignment can systematically bias molecular divergence time estimates. Our study demonstrates that PI profiles can provide a non-arbitrary criterion for data exclusion to mitigate the influence of homoplasy on time calibrated branch length estimates. Analyses of actinopterygian molecular clocks demonstrate that scrutiny of the time scale on which sequence data is informative is a fundamental, but generally overlooked, step in molecular divergence time estimation
Large transverse field tunnel splittings in the Fe_8 spin Hamiltonian
The spin Hamiltonian that describes the molecular magnet Fe has biaxial
symmetry with mutually perpendicular easy, medium, and hard magnetic axes.
Previous calculations of the ground state tunnel splittings in the presence of
a magnetic field along the hard axis are extended, and the meaning of the
previously discovered oscillation of this splitting is further clarified
On wormholes with arbitrarily small quantities of exotic matter
Recently several models of traversable wormholes have been proposed which
require only arbitrarily small amounts of negative energy to hold them open
against self-collapse. If the exotic matter is assumed to be provided by
quantum fields, then quantum inequalities can be used to place constraints on
the negative energy densities required. In this paper, we introduce an
alternative method for obtaining constraints on wormhole geometries, using a
recently derived quantum inequality bound on the null-contracted stress-energy
averaged over a timelike worldline. The bound allows us to perform a simplified
analysis of general wormhole models, not just those with small quantities of
exotic matter. We then use it to study, in particular, the models of Visser,
Kar, and Dadhich (VKD) and the models of Kuhfittig. The VKD models are
constrained to be either submicroscopic or to have a large discrepancy between
throat size and curvature radius. A recent model of Kuhfittig is shown to be
non-traversable. This is due to the fact that the throat of his wormhole flares
outward so slowly that light rays and particles, starting from outside the
throat, require an infinite lapse of affine parameter to reach the throat.Comment: 30 pages, 2 figure
Non-monotonic field-dependence of the ZFC magnetization peak in some systems of magnetic nanoparticles
We have performed magnetic measurements on a diluted system of gamma-Fe2O3
nanoparticles (~7nm), and on a ferritin sample. In both cases, the ZFC-peak
presents a non-monotonic field dependence, as has already been reported in some
experiments,and discussed as a possible evidence of resonant tunneling. Within
simple assumptions, we derive expressions for the magnetization obtained in the
usual ZFC, FC, TRM procedures. We point out that the ZFC-peak position is
extremely sensitive to the width of the particle size distribution, and give
some numerical estimates of this effect. We propose to combine the FC
magnetization with a modified TRM measurement, a procedure which allows a more
direct access to the barrier distribution in a field. The typical barrier
values which are obtained with this method show a monotonic decrease for
increasing fields, as expected from the simple effect of anisotropy barrier
lowering, in contrast with the ZFC results. From our measurements on
gamma-Fe2O3 particles, we show that the width of the effective barrier
distribution is slightly increasing with the field, an effect which is
sufficient for causing the observed initial increase of the ZFC-peak
temperatures.Comment: LaTeX file 19 pages, 9 postscript figures. To appear in Phys. Rev. B
(tentative schedule: Dec.97
Resonant Magnetization Tunneling in Mn12 Acetate: The Absence of Inhomogeneous Hyperfine Broadening
We present the results of a detailed study of the
thermally-assisted-resonant-tunneling relaxation rate of Mn12 acetate as a
function of an external, longitudinal magnetic field and find that the data can
be fit extremely well to a Lorentzian function. No hint of inhomogeneous
broadening is found, even though some is expected from the Mn nuclear hyperfine
interaction. This inconsistency implies that the tunneling mechanism cannot be
described simply in terms of a random hyperfine field.Comment: Some minor revisions, title changed, updated figures, two added
notes, one added reference. RevTeX, 4 pages, 3 postscript figures. Submitted
to Rapid Communication
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