JCoast – A biologist-centric software tool for data mining and comparison of prokaryotic (meta)genomes-4

Ts. For each CDS such a chart can be calculated on the fly, based on different taxonomic levels e.g. phylum, class, order, family or species. In addition also contextual information can be used for this calculation.<p><b>Copyright information:</b></p><p>Taken from "JCoast – A biologist-centric software tool for data mining and comparison of prokaryotic (meta)genomes"</p><p>http://www.biomedcentral.com/1471-2105/9/177</p><p>BMC Bioinformatics 2008;9():177-177.</p><p>Published online 1 Apr 2008</p><p>PMCID:PMC2311307.</p><p></p

JCoast – A biologist-centric software tool for data mining and comparison of prokaryotic (meta)genomes-0

N the middle, and the 'Observation Browser' at the bottom. The 'Genome Browser' provides a graphical representation of genes on the genomic or metagenomic contigs under investigation. The 'Table Browser' displays different types of regions (CDS, contig, tRNA and rRNA) belonging to a project. A button panel implements rapid switching between regions. The 'Observation Browser' at the bottom displays the different similarity search results for a CDS.<p><b>Copyright information:</b></p><p>Taken from "JCoast – A biologist-centric software tool for data mining and comparison of prokaryotic (meta)genomes"</p><p>http://www.biomedcentral.com/1471-2105/9/177</p><p>BMC Bioinformatics 2008;9():177-177.</p><p>Published online 1 Apr 2008</p><p>PMCID:PMC2311307.</p><p></p

JCoast – A biologist-centric software tool for data mining and comparison of prokaryotic (meta)genomes-5

<p><b>Copyright information:</b></p><p>Taken from "JCoast – A biologist-centric software tool for data mining and comparison of prokaryotic (meta)genomes"</p><p>http://www.biomedcentral.com/1471-2105/9/177</p><p>BMC Bioinformatics 2008;9():177-177.</p><p>Published online 1 Apr 2008</p><p>PMCID:PMC2311307.</p><p></p

JCoast – A biologist-centric software tool for data mining and comparison of prokaryotic (meta)genomes-2

<p><b>Copyright information:</b></p><p>Taken from "JCoast – A biologist-centric software tool for data mining and comparison of prokaryotic (meta)genomes"</p><p>http://www.biomedcentral.com/1471-2105/9/177</p><p>BMC Bioinformatics 2008;9():177-177.</p><p>Published online 1 Apr 2008</p><p>PMCID:PMC2311307.</p><p></p

JCoast – A biologist-centric software tool for data mining and comparison of prokaryotic (meta)genomes-3

N the middle, and the 'Observation Browser' at the bottom. The 'Genome Browser' provides a graphical representation of genes on the genomic or metagenomic contigs under investigation. The 'Table Browser' displays different types of regions (CDS, contig, tRNA and rRNA) belonging to a project. A button panel implements rapid switching between regions. The 'Observation Browser' at the bottom displays the different similarity search results for a CDS.<p><b>Copyright information:</b></p><p>Taken from "JCoast – A biologist-centric software tool for data mining and comparison of prokaryotic (meta)genomes"</p><p>http://www.biomedcentral.com/1471-2105/9/177</p><p>BMC Bioinformatics 2008;9():177-177.</p><p>Published online 1 Apr 2008</p><p>PMCID:PMC2311307.</p><p></p