Can we model DNA at the mesoscale ? Comment on: Fluctuations in the DNA double helix: A critical review

Comment on "Fluctuations in the DNA double helix: A critical review" by Frank-Kamenetskii and Prakas

Non-Gaussian distributions under scrutiny

International audienceComment of the very interesting paper by Hilhorst & Schehr, J. Stat. Mech. P06003 (2007). The main point is that one should be extremely careful when interpreting non-Gaussian data in terms of q-Gaussians

Discreteness effects on soliton dynamics: a simple experiment

We present a simple laboratory experiment to illustrate some aspects of the soliton theory in discrete lattices with a system that models the dynamics of dislocations in a crystal or the properties of adsorbed atomic layers. The apparatus not only shows the role of the Peierls-Nabarro potential but also illustrates the hierarchy of depinning transitions and the importance of the collective motion in mass transport.Comment: 9 pages, 4 Figures, to Appear in American Journal of Physic

Violation of ensemble equivalence in the antiferromagnetic mean-field XY model

It is well known that long-range interactions pose serious problems for the formulation of statistical mechanics. We show in this paper that ensemble equivalence is violated in a simple mean-field model of N fully coupled classical rotators with repulsive interaction (antiferromagnetic XY model). While in the canonical ensemble the rotators are randomly dispersed over all angles, in the microcanonical ensemble a bi-cluster of rotators separated by angle $\pi$, forms in the low energy limit. We attribute this behavior to the extreme degeneracy of the ground state: only one harmonic mode is present, together with N-1 zero modes. We obtain empirically an analytical formula for the probability density function for the angle made by the rotator, which compares extremely well with numerical data and should become exact in the zero energy limit. At low energy, in the presence of the bi-cluster, an extensive amount of energy is located in the single harmonic mode, with the result that the energy temperature relation is modified. Although still linear, $T = \alpha U$, it has the slope $\alpha \approx 1.3$, instead of the canonical value $\alpha =2$.Comment: 12 pages, Latex, 7 Figure

Modulational Estimate for Fermi-Pasta-Ulam Chain Lyapunov Exponents

In the framework of the Fermi-Pasta-Ulam (FPU) model, we show a simple method to give an accurate analytical estimation of the maximal Lyapunov exponent at high energy density. The method is based on the computation of the mean value of the modulational instability growth rates associated to unstable modes. Moreover, we show that the strong stochasticity threshold found in the $\beta$-FPU system is closely related to a transition in tangent space: the Lyapunov eigenvector being more localized in space at high energy.Comment: 4 pages, revtex, 4 ps figures, submitted to PR

Dead Waters: Large amplitude interfacial waves generated by a boat in a stratified fluid

We present fluid dynamics videos of the motion of a boat on a two-layer or three-layer fluid. Under certain specific conditions, this setup generates large amplitude interfacial waves, while no surface waves are visible. The boat is slowed down leading to a peristaltic effect and sometimes even stopped: this is the so-called dead water phenomenon

Resurrecting Dead-water Phenomenon

We revisit experimental studies performed by Ekman on dead-water using modern techniques in order to present new insights on this peculiar phenomenon. We extend its description to more general situations such as a three-layer fluid or a linearly stratified fluid in presence of a pycnocline, showing the robustness of dead-water phenomenon. We observe large amplitude nonlinear internal waves which are coupled to the boat dynamics, and we emphasize that the modeling of the wave-induced drag requires more analysis, taking into account nonlinear effects

Controversy about the applicability of Tsallis statistics to the HMF model

Comment to "Nonextensive Thermodynamics and Glassy Behaviour in Hamiltonian Systems" by A. Rapisarda and A. Pluchino, Europhysics News 36, 202 (2005)

Analytical Estimation of the Maximal lyapunov Exponent in Oscillator Chains

An analytical expression for the maximal Lyapunov exponent $\lambda_1$ in generalized Fermi-Pasta-Ulam oscillator chains is obtained. The derivation is based on the calculation of modulational instability growth rates for some unstable periodic orbits. The result is compared with numerical simulations and the agreement is good over a wide range of energy densities $\epsilon$. At very high energy density the power law scaling of $\lambda_1$ with $\epsilon$ can be also obtained by simple dimensional arguments, assuming that the system is ruled by a single time scale. Finally, we argue that for repulsive and hard core potentials in one dimension $\lambda_1 \sim \sqrt{\epsilon}$ at large $\epsilon$.Comment: Latex, 10 pages, 5 Figs - Contribution to the Conference "Disorder and Chaos" held in memory of Giovanni Paladin (Sept. 1997 - Rome) - submitted to J. de Physiqu