44 research outputs found

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    Amino acids as CH acids

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    RNA-cleaving deoxyribozymes can serve as selective sensors and catalysts to examine the modification state of RNA. However, site-specific endonuclease deoxyribozymes that selectively cleave posttranscriptionally modified RNA are extremely rare and their specificity over unmodified RNA is low. In this study, we report that the native tRNA modification N6^6-isopentenyladenosine (i6^6A) strongly enhances the specificity and has the power to reconfigure the active site of an RNA-cleaving deoxyribozyme. Using in vitro selection, we identified a DNA enzyme that cleaves i6^6A-modified RNA at least 2500-fold faster than unmodified RNA. Another deoxyribozyme shows unique and unprecedented behaviour by shifting its cleavage site in the presence of the i6^6A RNA modification. Together with deoxyribozymes that are strongly inhibited by i6^6A, these results highlight intricate ways of modulating the catalytic activity of DNA by posttranscriptional RNA modifications
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