Effects of crop type and harvest on nest survival and productivity of dickcissels in semi-natural grasslands

Recent focus on climate change and global energy production has increased interest in developing biofuels including perennial native grasses (e.g. switchgrass [Panicum virgatum]) as viable energy commodities while simultaneously maintaining ecosystem function and biodiversity. However, there is limited research examining the effects of biofuel-focused grasslands on grassland bird reproductive success and conservation. In 2011–2013 we studied the effects of vegetation composition and harvest regimens of switchgrass monocultures and native warm-season grass (NWSG) mixtures on nest success, nest density, and productivity for dickcissels (Spiza americana) in Clay Co. MS, USA. There was no effect of vegetation metrics, harvest frequency, or biofuel treatment on nest survival. However, both vegetation composition and harvest frequencies influenced nest density and productivity. Native warm season grasses contained 54–64 times more nests relative to switchgrass treatments, and nest density and productivity were 10% greater in single harvest plots. Our results suggest semi-natural grasslands can balance biofuel production, ecosystem functionality, and conservation so that biofuels offer an opportunity for wildlife conservation rather than a continued threat to grassland birds

Spatiotemporal Dynamics in Identification of Aircraft–Bird Strikes

A primary concern for human–wildlife interactions is the potential impacts resulting from wildlife (primarily birds) collisions with aircraft. The identification of species responsible for collisions with aircraft is necessary so that airport management can develop effective strategies to reduce strikes with those species. Of particular importance in developing such strategies is the identification of regional, seasonal, and temporal patterns in collisions with unidentified bird species that may limit the effectiveness of regional habitat management to reduce bird strikes. The authors analyzed 105,529 U.S. civil aviation strike records from 1990 to 2012 in the FAA’s National Wildlife Strike Database to examine patterns of collisions involving unidentified birds. Factors that affected identification were airport certification class, FAA region, mass of struck species, state species richness (if damage was reported), and interactive effects between the last four factors. Identification varied by region and declined with increasing species richness; this identification was greater for general aviation (GA) airports and the mass of struck species, especially when damage was reported. Species identification might be improved by increasing reporting efforts relative to species richness, especially by GA airport managers and operations staff, who may have a higher propensity of reporting bird strikes, and by collecting more fieldbased data on avian populations. The results can provide guidance for the development of airport management and personnel training

Spatiotemporal Dynamics in Identification of Aircraft–Bird Strikes

A primary concern for human–wildlife interactions is the potential impacts resulting from wildlife (primarily birds) collisions with aircraft. The identification of species responsible for collisions with aircraft is necessary so that airport management can develop effective strategies to reduce strikes with those species. Of particular importance in developing such strategies is the identification of regional, seasonal, and temporal patterns in collisions with unidentified bird species that may limit the effectiveness of regional habitat management to reduce bird strikes. The authors analyzed 105,529 U.S. civil aviation strike records from 1990 to 2012 in the FAA’s National Wildlife Strike Database to examine patterns of collisions involving unidentified birds. Factors that affected identification were airport certification class, FAA region, mass of struck species, state species richness (if damage was reported), and interactive effects between the last four factors. Identification varied by region and declined with increasing species richness; this identification was greater for general aviation (GA) airports and the mass of struck species, especially when damage was reported. Species identification might be improved by increasing reporting efforts relative to species richness, especially by GA airport managers and operations staff, who may have a higher propensity of reporting bird strikes, and by collecting more fieldbased data on avian populations. The results can provide guidance for the development of airport management and personnel training

Forage or Biofuel: Assessing Native Warm-season Grass Production among Seed Mixes and Harvest Frequencies within a Wildlife Conservation Framework

Native warm-season grasses (NWSG) are gaining merit as biofuel feedstocks for ethanol production with potential for concomitant production of cattle forage and wildlife habitat provision. However, uncertainty continues regarding optimal production approaches for biofuel yield and forage quality within landscapes of competing wildlife conservation objectives. We used a randomized complete block design of 4 treatments to compare vegetation structure, forage and biomass nutrients, and biomass yield between Panicum virgatum (Switchgrass) monocultures and NWSG polycultures harvested once or multiple times near West Point, MS, 2011–2013. Despite taller vegetation and greater biomass in Switchgrass monocultures, NWSG polycultures had greater vegetation structure heterogeneity and plant diversity that could benefit wildlife. However, nutritional content from harvest timings optimal for wildlife conservation (i.e., late dormant season-collected biomass and mid-summer hay samples) demonstrated greater support for biofuel production than quality cattle forage. Future research should consider testing various seed mixes for maximizing biofuel or forage production among multiple site conditions with parallel observations of wildlife use

Spitzer IRAC observations of newly-discovered planetary nebulae from the Macquarie-AAO-Strasbourg H-alpha Planetary Nebula Project

We compare H-alpha, radio continuum, and Spitzer Space Telescope (SST) images of 58 planetary nebulae (PNe) recently discovered by the Macquarie-AAO-Strasbo- urg H-alpha PN Project (MASH) of the SuperCOSMOS H-alpha Survey. Using InfraRed Array Camera (IRAC) data we define the IR colors of PNe and demonstrate good isolation between these colors and those of many other types of astronomical object. The only substantive contamination of PNe in the color-color plane we illustrate is due to YSOs. However, this ambiguity is readily resolved by the unique optical characteristics of PNe and their environs. We also examine the relationships between optical and MIR morphologies from 3.6 to 8.0um and explore the ratio of mid-infrared (MIR) to radio nebular fluxes, which is a valuable discriminant between thermal and nonthermal emission. MASH emphasizes late evolutionary stages of PNe compared with previous catalogs, enabling study of the changes in MIR and radio flux that attend the aging process. Spatially integrated MIR energy distributions were constructed for all MASH PNe observed by the GLIMPSE Legacy Project, using the H-alpha morphologies to establish the dimensions for the calculations of the Midcourse Space Experiment (MSX), IRAC, and radio continuum (from the Molonglo Observatory Synthesis Telescope and the Very Large Array) flux densities. The ratio of IRAC 8.0-um to MSX 8.3-um flux densities provides a measure of the absolute diffuse calibration of IRAC at 8.0 um. We independently confirm the aperture correction factor to be applied to IRAC at 8.0um to align it with the diffuse calibration of MSX. The result agrees with the recommendations of the Spitzer Science Center and with results from a parallel study of HII regions. These PNe probe the diffuse calibration of IRAC on a spatial scale of 9-77 arcsec.Comment: 48 pages, LaTeX (aastex), incl. 18 PostScript (eps) figures and 3 tables. Accepted by Astrophysical Journa

Bathymetry and geological setting of the South Sandwich Islands volcanic arc

The South Sandwich Islands and associated seamounts constitute the volcanic arc of an active subduction system situated in the South Atlantic. We introduce a map of the bathymetry and geological setting of the South Sandwich Islands and the associated East Scotia Ridge back-arc spreading centre that consists of two sides: side 1, a regional overview of the volcanic arc, trench and back-arc, and side 2, detailed maps of the individual islands. Side 1 displays the bathymetry at scale 1:750 000 of the intra-oceanic, largely submarine South Sandwich arc, the back-arc system and other tectonic boundaries of the subduction system. Satellite images of the islands on side 2 are at scales of 1:50 000 and 1:25 000 with contours and main volcanological features indicated. These maps are the first detailed topological and bathymetric maps of the area. The islands are entirely volcanic in origin, and most have been volcanically or fumarolically active in historic times. Many of the islands are ice-covered, and the map forms a baseline for future glaciological changes caused by volcanic activities and climate change. The back-arc spreading centre consists of nine segments, most of which have rift-like morphologie

Immunofibrogenic Gene Expression Patterns in Tanzanian Children with Ocular Chlamydia trachomatis Infection, Active Trachoma and Scarring: Baseline Results of a 4-Year Longitudinal Study.

Trachoma, caused by Chlamydia trachomatis, is the world's leading infectious cause of blindness and remains a significant public health problem. Much of trachomatous disease pathology is thought to be caused indirectly by host cellular and immune responses, however the immune response during active trachoma and how this initiates progressive scarring is not clearly understood. Defining protective vs. pathogenic immune response to C. trachomatis is important for vaccine design and evaluation. This study reports the baseline results of a longitudinal cohort of Tanzanian children, who were monitored for 4 years in order to determine the immunofibrogenic and infectious correlates of progressive scarring trachoma. In this cohort baseline, 506 children aged 6-10 years were assessed for clinical signs, infection status and the expression of 91 genes of interest prior to mass azithromycin administration for trachoma control. C. trachomatis was detected using droplet digital PCR and gene expression was measured using quantitative real-time PCR. The prevalence of follicles, papillary inflammation and scarring were 33.6, 31.6, and 28.5%, respectively. C. trachomatis was detected in 78/506 (15.4%) individuals, 62/78 of whom also had follicles. C. trachomatis infection was associated with a strong upregulation of IFNG and IL22, the enrichment of Th1 and NK cell pathways and Th17 cell-associated cytokines. In individuals with inflammation in the absence of infection the IFNG/IL22 and NK cell response was reduced, however, pro-inflammatory, growth and matrix factors remained upregulated and mucins were downregulated. Our data suggest that, strong IFNG/IL22 responses, probably related to Th1 and NK cell involvement, is important for clearance of C. trachomatis and that the residual pro-inflammatory and pro-fibrotic phenotype that persists after infection might contribute to pathological scarring. Interestingly, females appear more susceptible to developing papillary inflammation and scarring than males, even at this young age, despite comparable levels of C. trachomatis infection. Females also had increased expression of a number of IFNγ pathway related genes relative to males, suggesting that overexpression of this pathway in response to infection might contribute to more severe scarring. Longitudinal investigation of these factors will reveal their relative contributions to protection from C. trachomatis infection and development of scarring complications

Immunopathogenesis of Progressive Scarring Trachoma: Results of a 4-Year Longitudinal Study in Tanzanian Children.

Trachoma is initiated during childhood following repeated conjunctival infection with Chlamydia trachomatis, which causes a chronic inflammatory response in some individuals that leads to scarring and in-turning of the eyelids in later life. There is currently no treatment to halt the progression of scarring trachoma due to an incomplete understanding of disease pathogenesis. A cohort study was performed in northern Tanzania in 616 children aged 6 to 10 years at enrollment. Every 3 months for 4 years, children were examined for clinical signs of trachoma, and conjunctival swabs were collected for C. trachomatis detection and to analyze the expression of 46 immunofibrogenic genes. Data were analyzed in relation to progressive scarring status between baseline and the final time point. Genes that were significantly associated with scarring progression included those encoding proinflammatory chemokines (CXCL5, CCL20, CXCL13, and CCL18), cytokines (IL23A, IL19, and IL1B), matrix modifiers (MMP12 and SPARCL1), immune regulators (IDO1, SOCS3, and IL10), and a proinflammatory antimicrobial peptide (S100A7). In response to C. trachomatis infection, IL23A and PDGF were significantly upregulated in scarring progressors relative to in nonprogressors. Our findings highlight the importance of innate proinflammatory signals from the epithelium and implicate interleukin 23A (IL-23A)-responsive cells in driving trachomatous scarring, with potential key mechanistic roles for PDGFB, MMP12, and SPARCL1 in orchestrating fibrosis

Immunohistochemical Analysis of Scarring Trachoma Indicates Infiltration by Natural Killer and Undefined CD45 Negative Cells.

INTRODUCTION: The phenotype and function of immune cells infiltrating the conjunctiva in scarring trachoma have yet to be fully characterized. We assessed tissue morphology and immunophenotype of cellular infiltrates found in trachomatous scarring compared to control participants. METHODOLOGY: Clinical assessments and conjunctival biopsy samples were obtained from 34 individuals with trachomatous scarring undergoing trichiasis surgery and 33 control subjects undergoing cataract or retinal detachment surgery. Biopsy samples were fixed in buffered formalin and embedded in paraffin wax. Hematoxylin and eosin (H&E) staining was performed for assessment of the inflammatory cell infiltrate. Immunohistochemical staining of single markers on individual sections was performed to identify cells expressing CD3 (T-cells), CD4 (helper T-cells), CD8 (suppressor/cytotoxic T-cells and Natural Killer, NK, cells), NCR1 (NK cells), CD20 (B-cells), CD45 (nucleated hematopoietic cells), CD56 (NK and T-cells), CD68 (macrophages/monocytes) and CD83 (mature dendritic cells). The degree of scarring was assessed histologically using cross-polarized light to visualize collagen fibres. PRINCIPLE FINDINGS: Scarring, regardless of clinical inflammation, was associated with increased inflammatory cell infiltrates on H&E and CD45 staining. Scarring was also associated with increased CD8+ and CD56+ cells, but not CD3+ cells, suggestive of a NK cell infiltrate. This was supported by the presence of NCR1+ cells. There was some increase in CD20+ cells, but no evidence for increased CD4+, CD68+ or CD83+ cells. Numerous CD45 negative cells were also seen in the population of infiltrating inflammatory cells in scarred conjunctiva. Disorganization of the normal collagen architecture was strongly associated with clinical scarring. CONCLUSIONS/SIGNIFICANCE: These data point to the infiltration of immune cells with a phenotype suggestive of NK cells in conjunctival trachomatous scarring. A large proportion of CD45 negative inflammatory cells were also present. Future work should seek to understand the stimuli leading to the recruitment of these cells and their role in progressive scarring

The Potential Role of Halothiobacillus spp. in Sulfur Oxidation and Acid Generation in Circum-Neutral Mine Tailings Reservoirs

The biogeochemistry of acid mine drainage (AMD) derived from waste rock associated sulfide mineral oxidation is relatively well-characterized and linked to Acidithiobacillus spp.. However, little is understood about the microbial communities and sulfur cycling before AMD develops, a key component of its prevention. This study aimed to examine circum-neutral mining impacted water (MIW) communities and its laboratory enrichments for sulfur oxidizing bacteria (SoxBac). MIW in situ microbial communities differed in diversity, structure and relative abundance consistent with site specific variations in total aqueous sulfur concentrations (TotS; ~2–17 mM), pH (3.67–7.34), and oxygen (22–93% saturation). However, the sulfur oxidizer, Halothiobacillus spp. dominated seven of the nine total SoxBac enrichment communities (~76–100% relative abundance), spanning three of the four mines. The presence and relative abundance of the identified sixteen known and five unclassified Halothiobacillus spp. here, were the important clustering determinants across parent MIW and enrichment communities. Further, the presence of Halothiobacillus spp. was associated with driving the pH <4 in enrichment experiments, and the combination of specific Halothiobacillus spp. in the enrichments affected the observed acid to sulfate ratios indicating differential sulfur cycling. Halothiobacillus spp. also dominated the parent communities of the two acidic MIWs providing corroborating evidence for its active role in net acid generation within these waters. These results identify a putative indicator organism specific to mine tailings reservoirs and highlight the need for further study of tailings associated sulfur cycling for better mine management and environmental stewardship