Maximum clade credibility tree of <i>M</i>. <i>leprae</i> strains.

<p>The five <i>M</i>. <i>leprae</i> branches are highlighted. Nodes are labeled with median divergence times in years before present, with the 95% HPD given in brackets. Posterior probabilities for each branch are shown next to the branches. The nonhuman primate <i>M</i>. <i>leprae</i> genomes sequenced in this study are marked in red.</p

Scatter plot of date vs genetic distance of <i>M</i>. <i>leprae</i> strains.

<p>The x-axis denotes mean date in CE (calibrated radiocarbon date for ancient strains and isolation year for modern strains). The y-axis denotes root-to-tip genetic distance for each strain.</p

Results of whole-genome sequencing of nonhuman primate <i>M</i>. <i>leprae</i> strains.

<p>Results of whole-genome sequencing of nonhuman primate <i>M</i>. <i>leprae</i> strains.</p

Summary of SNP-effect analysis for the nonhuman primate <i>M</i>. <i>leprae</i> strains.

<p>Summary of SNP-effect analysis for the nonhuman primate <i>M</i>. <i>leprae</i> strains.</p