Flying lemurs - The 'flying tree shrews'? Molecular cytogenetic evidence for a Scandentia-Dermoptera sister clade

Abstract Background Flying lemurs or Colugos (order Dermoptera) represent an ancient mammalian lineage that contains only two extant species. Although molecular evidence strongly supports that the orders Dermoptera, Scandentia, Lagomorpha, Rodentia and Primates form a superordinal clade called Supraprimates (or Euarchontoglires), the phylogenetic placement of Dermoptera within Supraprimates remains ambiguous. Results To search for cytogenetic signatures that could help to clarify the evolutionary affinities within this superordinal group, we have established a genome-wide comparative map between human and the Malayan flying lemur (Galeopterus variegatus) by reciprocal chromosome painting using both human and G. variegatus chromosome-specific probes. The 22 human autosomal paints and the X chromosome paint defined 44 homologous segments in the G. variegatus genome. A putative inversion on GVA 11 was revealed by the hybridization patterns of human chromosome probes 16 and 19. Fifteen associations of human chromosome segments (HSA) were detected in the G. variegatus genome: HSA1/3, 1/10, 2/21, 3/21, 4/8, 4/18, 7/15, 7/16, 7/19, 10/16, 12/22 (twice), 14/15, 16/19 (twice). Reverse painting of G. variegatus chromosome-specific paints onto human chromosomes confirmed the above results, and defined the origin of the homologous human chromosomal segments in these associations. In total, G. variegatus paints revealed 49 homologous chromosomal segments in the HSA genome. Conclusion Comparative analysis of our map with published maps from representative species of other placental orders, including Scandentia, Primates, Lagomorpha and Rodentia, suggests a signature rearrangement (HSA2q/21 association) that links Scandentia and Dermoptera to one sister clade. Our results thus provide new evidence for the hypothesis that Scandentia and Dermoptera have a closer phylogenetic relationship to each other than either of them has to Primates.RIGHTS : This article is licensed under the BioMed Central licence at http://www.biomedcentral.com/about/license which is similar to the 'Creative Commons Attribution Licence'. In brief you may : copy, distribute, and display the work; make derivative works; or make commercial use of the work - under the following conditions: the original author must be given credit; for any reuse or distribution, it must be made clear to others what the license terms of this work are

Chromosomal rearrangements and karyotype evolution in carnivores revealed by chromosome painting

Chromosomal evolution in carnivores has been revisited extensively using cross-species chromosome painting. Painting probes derived from flow-sorted chromosomes of the domestic dog, which has one of the most rearranged karyotypes in mammals and the highest dipoid number (2n=78) in carnivores, are a powerful tool in detecting both evolutionary intra- and inter-chromosomal rearrangements. However, only a few comparative maps have been established between dog and other non-Canidae species. Here, we extended cross-species painting with dog probes to seven more species representing six carnivore families: Eurasian lynx (Lynx lynx), the stone marten (Martes foina), the small Indian civet (Viverricula indica), the Asian palm civet (Paradoxurus hermaphrodites), Javan mongoose (Hepestes javanicas), the raccoon (Procyon lotor) and the giant panda (Ailuropoda melanoleuca). The numbers and positions of intra-chromosomal rearrangements were found to differ among these carnivore species. A comparative map between human and stone marten, and a map among the Yangtze finless porpoise (Neophocaena phocaenoides asiaeorientalis), stone marten and human were also established to facilitate outgroup comparison and to integrate comparative maps between stone marten and other carnivores with such maps between human and other species. These comparative maps give further insight into genome evolution and karyotype phylogenetic relationships among carnivores, and will facilitate the transfer of gene mapping data from human, domestic dog and cat to other species

A study on karyotype of masked palm civet (Paguma lavata) by conventional staining and G-banding method

This is a karyotypic study of the masked palm civet, Paguma lavata (Carnivora, Viverridae). Blood samples were taken from one male and two females kept in Khao Khiew Open Zoo. After the standard whole blood lymphocyte culture at 37ºC for 72 h. in presence of colchicine, metaphase spreads were prepared on microscopic slides and air-dried. Conventional staining and G-banding method were applied to stain the chromosome. The results showed that the number of diploid chromosomes of masked palm civet was 2n = 44, the fundamental number (NF) was 72 in the male and female. The type of autosomes were 2 large metacentric, 6 large submetacentric, 6 large acrocentric, 2 large telocentric, 2 medium metacentric, 2 medium submetacentric, 2 medium acrocentric, 8 medium telocentric, 2 small metacentric, 2 small submetacentric, 2 small acrocentric and 6 small telocentric chromosomes. In addition, there was a pair of chromosome 17 with clearly observable satellite chromosome. X-chromosome is a large submetacentric and Y chromosome is the smallest submetacentric chromosome. From the G-banding technique, the number of bands and locations of G-band in masked palm civet was 141 and each chromosome pair could be clearly differentiated. The karyotype formula for the male and female masked palm civet is as follows: 2n (44) = Lm 2+Lsm 6+La 6+ Lt 2+Mm 2+Msm 2+Ma 2+Mt 8+Sm 2+Ssm 2+Sa 2+St 6 + Sex-chromosom

Identifying an efficient bacterial species and its genetic erosion for arsenic bioremediation of gold mining soil

To improve bioremediation of arsenic (As) contamination in soil, the use of microorganisms to efficiently reduce As and their assessment of genetic erosion by DNA damage using genomic template stability (GTS) evaluation and using RAPD markers were investigated. The five sites examined for microorganisms and contaminated soils were collected from affected gold mining areas. The highest As concentration in gold mining soil is 0.72 mg/kg. Microorganism strains isolated from the gold mining soil samples were tested for As removal capacity. Two bacterial isolates were identified by 16S rRNA gene sequence analysis and morphological characteristics as Brevibacillus reuszeri and Rhodococcus sp. The ability to treat As in nutrient agar (NA) at 1,600 mg/L and contaminated soil samples at 0.72 mg/kg was measured at 168 h, revealing more efficient As removal by B. reuszeri than Rhodococcus sp. (96.67% and 94.17%, respectively). Both species have the capacity to remove As, but B. reuszeri shows improved growth compared to the Rhodococcus sp. B. reuszeri might be suitable for adaptation and use in As treatment. The results are in agreement with their genetic erosion values, with B. reuszeri showing very little genetic erosion (12.46%) of culture in As concentrations as high as 1,600 mg/L, whereas 82.54% genetic erosion occurred in the Rhodococcus sp., suggesting that Rhodococcus sp. would not survive at this level of genetic erosion. Therefore, B. reuszeri has a high efficiency and can be used for soil As treatment, as it is capable to tolerate a concentration of 0.72 mg/kg and as high as 1,600 mg/L in NA

Flying lemurs - The 'flying tree shrews'? Molecular cytogenetic evidence for a Scandentia-Dermoptera sister clade

Abstract Background Flying lemurs or Colugos (order Dermoptera) represent an ancient mammalian lineage that contains only two extant species. Although molecular evidence strongly supports that the orders Dermoptera, Scandentia, Lagomorpha, Rodentia and Primates form a superordinal clade called Supraprimates (or Euarchontoglires), the phylogenetic placement of Dermoptera within Supraprimates remains ambiguous. Results To search for cytogenetic signatures that could help to clarify the evolutionary affinities within this superordinal group, we have established a genome-wide comparative map between human and the Malayan flying lemur (Galeopterus variegatus) by reciprocal chromosome painting using both human and G. variegatus chromosome-specific probes. The 22 human autosomal paints and the X chromosome paint defined 44 homologous segments in the G. variegatus genome. A putative inversion on GVA 11 was revealed by the hybridization patterns of human chromosome probes 16 and 19. Fifteen associations of human chromosome segments (HSA) were detected in the G. variegatus genome: HSA1/3, 1/10, 2/21, 3/21, 4/8, 4/18, 7/15, 7/16, 7/19, 10/16, 12/22 (twice), 14/15, 16/19 (twice). Reverse painting of G. variegatus chromosome-specific paints onto human chromosomes confirmed the above results, and defined the origin of the homologous human chromosomal segments in these associations. In total, G. variegatus paints revealed 49 homologous chromosomal segments in the HSA genome. Conclusion Comparative analysis of our map with published maps from representative species of other placental orders, including Scandentia, Primates, Lagomorpha and Rodentia, suggests a signature rearrangement (HSA2q/21 association) that links Scandentia and Dermoptera to one sister clade. Our results thus provide new evidence for the hypothesis that Scandentia and Dermoptera have a closer phylogenetic relationship to each other than either of them has to Primates.RIGHTS : This article is licensed under the BioMed Central licence at http://www.biomedcentral.com/about/license which is similar to the 'Creative Commons Attribution Licence'. In brief you may : copy, distribute, and display the work; make derivative works; or make commercial use of the work - under the following conditions: the original author must be given credit; for any reuse or distribution, it must be made clear to others what the license terms of this work are