Photic Zone Euxinia and Microbial Mat Development in the Early Triassic of the Perth Basin, Western Australia: Implications for Petroleum Systems

Reconstruction of basin-scale paleogeography and paleoenvironments in the northern Perth Basin during the Early Triassic, utilising integrated geological and organic geochemical analyses, shows the distribution of photic zone euxinia and microbial mats following the end-Permian mass extinction. Such analyses also distinguish the organic geochemical signatures of photic zone euxinia and microbial mats, identify source rock potential across the basin, and have implications for the petroleum system in both the northern Perth and Northern Carnarvon basins

Photoluminescence, morphology, and structure of hydrothermal ZnO implanted at room temperature with 60 keV Sn+ ions

Hydrothermal ZnO wafers implanted at room temperature with 60 keV Sn^+ ions are examined by means of photoluminescence (PL), atomic force spectroscopy (AFM), and X-ray diffractometry techniques. The PL intensity significantly decreases in the wafers implanted to doses of 4.1 × 10^[13] ions/cm^2 and higher. The AFM measurements indicate that surface roughness variation is not the cause of the significant decrease in PL intensity. Furthermore, the PL deep level (DL) band peak blueshifts after illuminating the implanted samples with the He-Cd laser 325 nm line; meanwhile, the DL band intensity first increases and then decreases with illumination time. These abnormal behaviors of the DL band are discussed

Establishment and Validation of Computational Model for MT1-MMP Dependent ECM Degradation and Intervention Strategies

MT1-MMP is a potent invasion-promoting membrane protease employed by aggressive cancer cells. MT1-MMP localizes preferentially at membrane protrusions called invadopodia where it plays a central role in degradation of the surrounding extracellular matrix (ECM). Previous reports suggested a role for a continuous supply of MT1-MMP in ECM degradation. However, the turnover rate of MT1-MMP and the extent to which the turnover contributes to the ECM degradation at invadopodia have not been clarified. To approach this problem, we first performed FRAP (Fluorescence Recovery after Photobleaching) experiments with fluorescence-tagged MT1-MMP focusing on a single invadopodium and found very rapid recovery in FRAP signals, approximated by double-exponential plots with time constants of 26 s and 259 s. The recovery depended primarily on vesicle transport, but negligibly on lateral diffusion. Next we constructed a computational model employing the observed kinetics of the FRAP experiments. The simulations successfully reproduced our FRAP experiments. Next we inhibited the vesicle transport both experimentally, and in simulation. Addition of drugs inhibiting vesicle transport blocked ECM degradation experimentally, and the simulation showed no appreciable ECM degradation under conditions inhibiting vesicle transport. In addition, the degree of the reduction in ECM degradation depended on the degree of the reduction in the MT1-MMP turnover. Thus, our experiments and simulations have established the role of the rapid turnover of MT1-MMP in ECM degradation at invadopodia. Furthermore, our simulations suggested synergetic contributions of proteolytic activity and the MT1-MMP turnover to ECM degradation because there was a nonlinear and marked reduction in ECM degradation if both factors were reduced simultaneously. Thus our computational model provides a new in silico tool to design and evaluate intervention strategies in cancer cell invasion

Hydrolyzed eggshell membrane immobilized on phosphorylcholine polymer supplies extracellular matrix environment for human dermal fibroblasts

We have found that a water-soluble alkaline-digested form of eggshell membrane (ASESM) can provide an extracellular matrix (ECM) environment for human dermal fibroblast cells (HDF) in vitro. Avian eggshell membrane (ESM) has a fibrous-meshwork structure and has long been utilized as a Chinese medicine for recovery from burn injuries and wounds in Asian countries. Therefore, ESM is expected to provide an excellent natural material for biomedical use. However, such applications have been hampered by the insolubility of ESM proteins. We have used a recently developed artificial cell membrane biointerface, 2-methacryloyloxyethyl phosphorylcholine polymer (PMBN) to immobilize ASESM proteins. The surface shows a fibrous structure under the atomic force microscope, and adhesion of HDF to ASESM is ASESM-dose-dependent. Quantitative mRNA analysis has revealed that the expression of type III collagen, matrix metalloproteinase-2, and decorin mRNAs is more than two-fold higher when HDF come into contact with a lower dose ASESM proteins immobilized on PMBN surface. A particle-exclusion assay with fixed erythrocytes has visualized secreted water-binding molecules around the cells. Thus, HDF seems to possess an ECM environment on the newly designed PMBN-ASESM surface, and future applications of the ASESM-PMBN system for biomedical use should be of great interest

Photic zone redox oscillations and microbialite development recorded by Early Triassic sediments of the Perth Basin: A geochemical approach

Photic zone euxinia (PZE) has previously been identified in the Early Triassic Kockatea Shale of the northern Perth Basin, based on the presence of biomarkers such as isorenieratane, which is derived from isorenieratene produced by green sulfur bacteria. However, green and purple sulfur bacteria can also occur in microbial mats. In this study we present a basin-scale assessment of biomarkers associated with open water column PZE and/or microbialites. The lithofacies from the Early Triassic of the northern part of the northern Perth Basin consist of dark coloured mudstones (black to dark grey) with microbialites, which were deposited away from basin margins. These samples are found to contain okenane, chlorobactane and isorenieratane derived from carotenoid pigments of purple, green-green and green–brown sulfur bacteria, respectively. These biomarkers are not observed in the light coloured mudstones (medium grey) formed under oxic conditions in a tidal environment with higher clastic input close to the basin margins in the southern part of the basin where shallow marine sandstones were also deposited. Okenane and chlorobactane were abundant in facies containing microbialites which developed in a shallow water setting on intra-basinal structural highs. The development of oxic conditions near the basin margins in the Perth Basin provided refuges for organisms during the end Permian mass extinction event. Okenane was more abundant in the microbialite facies compared with the dark coloured mudstones deposited under PZE. C33 n-alkylcyclohexane (n-C33 ACH) has previously been described as a biomarker associated with ecosystem collapse during the lower Triassic, and its ratio relative to the C34 n-alkane was elevated in facies that contain abundant microbialites. Mercury (Hg) to total reduced inorganic sulfur (TRIS) and Hg to total organic carbon (TOC) ratios are positively correlated, supporting the development of euxinia as sulfide sequesters Hg. The high Hg/TRIS values in microbialite facies support mat development with high Hg concentrations. The values of δ13COM and δ34S were isotopically lighter in microbialite facies when compared with mudstones formed under PZE, although samples deposited under oxic conditions showed the isotopically lightest δ13COM and isotopically heaviest δ34S. The variation in δ13COM probably reflects the different carbon fixation pathway of various sulfur bacteria, while it appears that the difference of δ34S values between PZE and microbialites is a result of differences in the microbial community structure and the higher relative abundance of purple sulfur bacteria. In addition, fluctuations between PZE and oxic conditions were identified throughout the sampled intervals attributed to fluctuations in the depth of chemocline. Under the shallower chemocline, PZE developed widely in the basin, even in shallower waters. Under the deeper chemocline PZE was absent or limited to deeper water, and oxic conditions developed in shallower water. The fluctuations of PZE and oxic conditions in the northern Perth Basin suggest the development of multiple episodes of harsh environmental conditions after the end-Permian mass extinction, similar to those identified in other regions (e.g., Meishan in China and Peace River in Canada)

Spur Dike Applications for the Sustainability of Channels in Incised Steep Bend Streams

Japan’s rivers are shaped by distinctive topography and abundant rainfall, and they face flooding and sediment supply escalation concerns under climate change. Small- and medium-sized rivers tend to catch unprecedented forces that exceed planned levels, leading to substantial widening and excavation. Thus, there is a demand for a method that is capable of managing significant flood flows over an extended period. The spur dike can maintain channel clearance by promoting erosion as well as providing bank protection. However, the effectiveness of this spur dike function has not been well studied in small- and medium-sized rivers and curved reaches. In this study, we evaluate the function of spur dikes in improving channel sustainability based on examples of small- and medium-sized rivers that have maintained their channel for more than ten years after spur dike installation. First, the applicability of the empirical rule was evaluated by comparing it with actual cases of erosion depths in curved sections in Japan. Next, one-dimensional simulations were performed to evaluate the sustainability of the section over a long period. Finally, a depth-averaged morphodynamic simulation, including the secondary flow effect, was applied to evaluate the location of the flow core and elevation changes due to the spur dike. The results showed that a slight difference in the ratio of river curvature radius to river width (r/B) caused the river channel to be erosive and sedimentary. The reasons for the difference were the cross-sectional expansion caused by the excavation of the bend and the difference in the plane flow regime caused by the shift of the flow core to the inside of the bend. Although it is structurally challenging to reproduce localized scour around a spur dike in a depth-averaged simulation, it is essential for designing to apply the simulation model and combine empirical knowledge

Impact of Incident Osteoporotic Vertebral Fractures on 5-Year Postoperative Outcomes and Spinal Alignment Following Lumbar Fusion Surgery

Introduction: Osteoporotic vertebral fractures (OVFs) are a significant problem among older patients who are undergoing spine surgery. This study examined the influence of incident OVFs on clinical outcomes and spinal alignment 5 years following short-segment fusion (SSF) for lumbar spinal stenosis. Methods: We studied 88 patients who underwent SSF (2-disc level) for lumbar spinal stenosis with instability and were followed up for more than 5 years postoperatively. Those with prior OVFs were excluded. We evaluated incident OVFs with plain whole-spine lateral radiography preoperatively (before) and at 5 years postoperatively (after). Using preoperative lumbar computed tomography, Hounsfield unit (HU) values were evaluated. The patients were classified into two groups according to the presence of incident OVFs. Repeated-measures analysis of variance was utilized to compare the Japanese Orthopaedic Association Back Pain Evaluation Questionnaire (JOABPEQ) and the 36-item Short-Form Health Survey (SF-36), and spinal parameters were recorded before and after. Multiple linear regression analyses were employed to investigate the association between the incident OVFs and the clinical scores and spinal alignment recorded after. Results: In the fracture group, the clinical course of low back pain score on the JOABPEQ, physical component summary SF-36 score, and spinal alignment including C7 sagittal vertical axis (SVA), thoracic kyphosis (TK), and pelvic tilt were significantly worse. Multiple linear regression revealed a significant correlation between incident OVFs and worse 5-year postoperative spinal alignment, which includes SVA and TK. The optimal threshold for the HU values for predicting the incidence of OVFs within 5 years postoperatively was 83.0 (area under the curve 0.701). Conclusions: Incident OVFs in patients following SSF were significantly correlated with the 5-year clinical outcomes and spinal alignment. Patients at risk of OVFs, especially those with HU values below 83, must take preventive measures against OVFs, as this could prevent deteriorating midterm postoperative clinical outcomes and spinal alignment. Level of Evidence: