The visual microphone: Passive recovery of sound from video

When sound hits an object, it causes small vibrations of the object's surface. We show how, using only high-speed video of the object, we can extract those minute vibrations and partially recover the sound that produced them, allowing us to turn everyday objects---a glass of water, a potted plant, a box of tissues, or a bag of chips---into visual microphones. We recover sounds from high-speed footage of a variety of objects with different properties, and use both real and simulated data to examine some of the factors that affect our ability to visually recover sound. We evaluate the quality of recovered sounds using intelligibility and SNR metrics and provide input and recovered audio samples for direct comparison. We also explore how to leverage the rolling shutter in regular consumer cameras to recover audio from standard frame-rate videos, and use the spatial resolution of our method to visualize how sound-related vibrations vary over an object's surface, which we can use to recover the vibration modes of an object.Qatar Computing Research InstituteNational Science Foundation (U.S.) (CGV-1111415)National Science Foundation (U.S.). Graduate Research Fellowship (Grant 1122374)Massachusetts Institute of Technology. Department of MathematicsMicrosoft Research (PhD Fellowship

A generative model for natural sounds based on latent force modelling

Generative models based on subband amplitude envelopes of natural sounds have resulted in convincing synthesis, showing subband amplitude modulation to be a crucial component of auditory perception. Probabilistic latent variable analysis can be particularly insightful, but existing approaches don’t incorporate prior knowledge about the physical behaviour of amplitude envelopes, such as exponential decay or feedback. We use latent force modelling, a probabilistic learning paradigm that encodes physical knowledge into Gaussian process regression, to model correlation across spectral subband envelopes. We augment the standard latent force model approach by explicitly modelling dependencies across multiple time steps. Incorporating this prior knowledge strengthens the interpretation of the latent functions as the source that generated the signal. We examine this interpretation via an experiment showing that sounds generated by sampling from our probabilistic model are perceived to be more realistic than those generated by comparative models based on nonnegative matrix factorisation, even in cases where our model is outperformed from a reconstruction error perspective

Isolation and fine mapping of Rps6: An intermediate host resistance gene in barley to wheat stripe rust

A plant may be considered a nonhost of a pathogen if all known genotypes of a plant species are resistant to all known isolates of a pathogen species. However, if a small number of genotypes are susceptible to some known isolates of a pathogen species this plant maybe considered an intermediate host. Barley (Hordeum vulgare) is an intermediate host for Puccinia striiformis f. sp. tritici (Pst), the causal agent of wheat stripe rust. We wanted to understand the genetic architecture underlying resistance to Pst and to determine whether any overlap exists with resistance to the host pathogen, Puccinia striiformis f. sp. hordei (Psh). We mapped Pst resistance to chromosome 7H and show that host and intermediate host resistance is genetically uncoupled. Therefore, we designate this resistance locus Rps6. We used phenotypic and genotypic selection on F2:3 families to isolate Rps6 and fine mapped the locus to a 0.1 cM region. Anchoring of the Rps6 locus to the barley physical map placed the region on two adjacent fingerprinted contigs. Efforts are now underway to sequence the minimal tiling path and to delimit the physical region harbouring Rps6. This will facilitate additional marker development and permit identification of candidate genes in the region

From fibers to satellites: Lessons to learn and pitfalls to avoid when optical communications move to long distance free space

peer reviewedThe paper summarizes the recent investigation on feasibility of adapting state-of-the-art coherent fiber-optics (FO) systems for Free Space Optical (FSO) scenarios. This investigation is critically dependent on the intertwined aspects of architecture, as well as device and propagation impairments (including the channel) appearing in the aforementioned systems. Towards this, the work identified the key system differences between the two systems. Particularly, the FSO channel model was investigated, impact of atmospheric turbulence on FSO was discussed and a channel series was generated. Subsequently, relevant FO techniques including coherent detection, wavelength division multiplexing and Time-Frequency packing (TFP) were reviewed. Another departure from FSO works was the emphasis on coherent reception; receiver architectures and diversity schemes were first investigated. The former strived to make fair comparison amongst the receivers considering the diverse nature of perturbation added, while the latter indicated gain in performance through increase of diversity order (2-4 dB gain). An immediate conclusion is a suggestion on adaptation of wavelength diversity when coherent receivers. The investigation also evaluated the capacity and outage of fast and slow fading channels with parameters motivated by the channel modelling work. The shaping gain was evaluated and an LDPC code design example was provided for FSO downlinks. Finally, TFP enabled a remarkable performance gain when applied to coherent detection schemes, but only marginal with direct detection. The paper concludes by pointing to the next steps that build on this investigation and the need to corroborate with measurements

Case Report The Solitary Variant of Mandibular Intraosseous Neurofibroma: Report of a Rare Entity

Neurofibroma (NF) is a benign neoplasm derived from peripheral nerve cells. NF may extend either as a solitary lesion or as part of a generalized syndrome of neurofibromatosis. Intraorally, the intraosseous variant of neurofibroma is a very rare tumor. The literature provides only few cases of solitary intraosseous neurofibroma of the mandible. We report a case of 28-year-old female who was diagnosed with a solitary intraosseous neurofibroma involving the lower left quadrant of the mandible. The present case is rare in regard to its dimensions and its location

DiVenn: An Interactive and Integrated Web-Based Visualization Tool for Comparing Gene Lists

Gene expression data generated from multiple biological samples (mutant, double mutant, and wild-type) are often compared via Venn diagram tools. It is of great interest to know the expression pattern between overlapping genes and their associated gene pathways or gene ontology (GO) terms. We developed DiVenn (Dive into the Venn diagram and create a force directed graph)—a novel web-based tool that compares gene lists from multiple RNA-Seq experiments in a force-directed graph, which shows the gene regulation levels for each gene and integrated KEGG pathway and gene ontology knowledge for the data visualization. DiVenn has four key features: (1) informative force-directed graph with gene expression levels to compare multiple data sets; (2) interactive visualization with biological annotations and integrated pathway and GO databases, which can be used to subset or highlight gene nodes to pathway or GO terms of interest in the graph; (3) Pathway and GO enrichment analysis of all or selected genes in the graph; and (4) high resolution image and gene-associated information export. DiVenn is freely available at http://divenn.noble.org/

EGFR oligomerization organizes kinase-active dimers into competent signalling platforms

Epidermal growth factor receptor (EGFR) signalling is activated by ligand-induced receptor dimerization. Notably, ligand binding also induces EGFR oligomerization, but the structures and functions of the oligomers are poorly understood. Here, we use fluorophore localization imaging with photobleaching to probe the structure of EGFR oligomers. We find that at physiological epidermal growth factor (EGF) concentrations, EGFR assembles into oligomers, as indicated by pairwise distances of receptor-bound fluorophore-conjugated EGF ligands. The pairwise ligand distances correspond well with the predictions of our structural model of the oligomers constructed from molecular dynamics simulations. The model suggests that oligomerization is mediated extracellularly by unoccupied ligand-binding sites and that oligomerization organizes kinase-active dimers in ways optimal for auto-phosphorylation in trans between neighbouring dimers. We argue that ligand-induced oligomerization is essential to the regulation of EGFR signalling

Declines in risk behaviour and sexually transmitted infection prevalence following a community-led HIV preventive intervention among female sex workers in Mysore, India.

OBJECTIVE: To investigate the impact on sexual behaviour and sexually transmitted infections (STI) of a comprehensive community-led intervention programme for reducing sexual risk among female sex workers (FSW) in Mysore, India. The key programme components were: community mobilization and peer-mediated outreach; increasing access to and utilization of sexual health services; and enhancing the enabling environment to support programme activities. METHODS: Two cross-sectional surveys among random samples of FSW were conducted 30 months apart, in 2004 and 2006. RESULTS: Of over 1000 women who sell sex in Mysore city, 429 participated in the survey at baseline and 425 at follow-up. The median age was 30 years, median duration in sex work 4 years, and the majority were street based (88%). Striking increases in condom use were seen between baseline and follow-up surveys: condom use at last sex with occasional clients was 65% versus 90%, P < 0001; with repeat clients 53% versus 66%, P < 0.001; and with regular partners 7% versus 30%, P < 0.001. STI prevalence declined from baseline to follow-up: syphilis 25% versus 12%, P < 0.001; trichomonas infection 33% versus 14%, P < 0.001; chlamydial infection 11% versus 5%, P = 0.001; gonorrhoea 5% versus 2%, P = 0.03. HIV prevalence remained stable (26% versus 24%), and detuned assay testing suggested a decline in recent HIV infections. CONCLUSION: This comprehensive HIV preventive intervention empowering FSW has resulted in striking increases in reported condom use and a concomitant reduction in the prevalence of curable STI. This model should be replicated in similar urban settings across India