Stretched State Excitations in the 26-Mg(p,n)26-Al Reaction at 134 MeV

This research was sponsored by the National Science Foundation Grant NSF PHY 87-1440

Simulations of winter ozone in the Upper Green River basin, Wyoming, using WRF-Chem

In the Upper Green River basin (UGRB) of Wyoming and the Uintah Basin of Utah, strong wintertime ozone (O3) formation episodes leading to O3 mixing ratios occasionally exceeding 70 parts per billion (ppb) have been observed over the last 2 decades. Wintertime O3 events in the UGRB were first observed in 2005 and since then have continued to be observed intermittently when meteorological conditions are favorable, despite significant efforts to reduce emissions from oil and natural gas extraction and production. While O3 formation has been successfully simulated using observed volatile organic compound (VOC) and nitrogen oxide (NOx) mixing ratios, successful simulation of these wintertime episodes using emission inventories in a 3-D photochemical model has remained elusive. An accurate 3-D photochemical model driven by an emission inventory is critical to understanding the spatial extent of high-O3 events and which emission sources have the most impact on O3 formation. In the winter of 2016/17 (December 2016–March 2017) several high-O3 events were observed with 1 h mixing ratios exceeding 70 ppb. This study uses the Weather Research and Forecasting model coupled with Chemistry (WRF-Chem) to simulate one of the high-O3 events observed in the UGRB during March 2017. The WRF-Chem simulations were carried out using the 2014 edition of the Environmental Protection Agency National Emissions Inventory (EPA NEI2014v2), which, unlike previous versions, includes estimates of emissions from non-point oil and gas production sources. Simulations were carried out with two different chemical mechanisms: the Model for Ozone and Related Chemical Tracers (MOZART) and the Regional Atmospheric Chemistry Mechanism (RACM), and the results were compared with data from seven weather and air quality monitoring stations in the UGRB operated by the Wyoming Department of Environmental Quality (WYDEQ). The simulated meteorology compared favorably to observations with regard to temperature inversions, surface temperature, and wind speeds. Notably, because of snow cover present in the basin, the photolysis surface albedo had to be modified to predict O3 in excess of 70 ppb, although the models were relatively insensitive to the exact photolysis albedo if it was over 0.65. O3 precursors, i.e., NOx and VOCs, are predicted similarly in simulations with both chemical mechanisms, but simulated VOC mixing ratios are a factor of 6 or more lower than the observations, while NOx is also underpredicted but to a lesser degree. Sensitivity simulations revealed that increasing NOx and VOC emissions to match observations produced slightly more O3 compared to baseline simulations, but an additional sensitivity simulation with doubled NOx emissions resulted in a considerable increase in O3 formation. These results suggest that O3 formation in the basin is most sensitive to NOx emissions.</p

Dynamic, mating-induced gene expression changes in female head and brain tissues of Drosophila melanogaster

BACKGROUND: Drosophila melanogaster females show changes in behavior and physiology after mating that are thought to maximize the number of progeny resulting from the most recent copulation. Sperm and seminal fluid proteins induce post-mating changes in females, however, very little is known about the resulting gene expression changes in female head and central nervous system tissues that contribute to the post-mating response. RESULTS: We determined the temporal gene expression changes in female head tissues 0-2, 24, 48 and 72 hours after mating. Females from each time point had a unique post-mating gene expression response, with 72 hours post-mating having the largest number of genes with significant changes in expression. At most time points, genes expressed in the head fat body that encode products involved in metabolism showed a marked change in expression. Additional analysis of gene expression changes in dissected brain tissues 24 hours post-mating revealed changes in transcript abundance of many genes, notably, the reduced transcript abundance of genes that encode ion channels. CONCLUSIONS: Substantial changes occur in the regulation of many genes in female head tissues after mating, which might underlie aspects of the female post-mating response. These results provide new insights into the physiological and metabolic changes that accompany changes in female behaviors

Sorting of chromosomes by magnetic separation

Chromosomes were isolated from Chinese hamster x human hybrid cell lines containing four and nine human chromosomes. Human genomic DNA was biotinylated by nick translation and used to label the human chromosomes by in situ hybridization in suspension. Streptavidin was covalently coupled to the surface of magnetic beads and these were incubated with the hybridized chromosomes. The human chromosomes were bound to the magnetic beads through the strong biotin-streptavidin complex and then rapidly separated from nonlabeled Chinese hamster chromosomes by a simple permanent magnet. The hybridization was visualized by additional binding of avidin-FITC (fluorescein) to the unoccupied biotinylated human DNA bound to the human chromosomes. After magnetic separation, up to 98% of the individual chromosomes attached to magnetic beads were classified as human chromosomes by fluorescence microscopy

Outbreak of beriberi among African union troops in Mogadishu, Somalia

Context and Objectives: In July 2009, WHO and partners were notified of a large outbreak of unknown illness, including deaths, among African Union (AU) soldiers in Mogadishu. Illnesses were characterized by peripheral edema, dyspnea, palpitations, and fever. Our objectives were to determine the cause of the outbreak, and to design and recommend control strategies. Design, Setting, and Participants: The illness was defined as acute onset of lower limb edema, with dyspnea, chest pain, palpitations, nausea, vomiting, abdominal pain, or headache. Investigations in Nairobi and Mogadishu included clinical, epidemiologic, environmental, and laboratory studies. A case-control study was performed to identify risk factors for illness. Results: From April 26, 2009 to May 1, 2010, 241 AU soldiers had lower limb edema and at least one additional symptom; four patients died. At least 52 soldiers were airlifted to hospitals in Kenya and Uganda. Four of 31 hospitalized patients in Kenya had right-sided heart failure with pulmonary hypertension. Initial laboratory investigations did not reveal hematologic, metabolic, infectious or toxicological abnormalities. Illness was associated with exclusive consumption of food provided to troops (not eating locally acquired foods) and a high level of insecurity (e.g., being exposed to enemy fire on a daily basis). Because the syndrome was clinically compatible with wet beriberi, thiamine was administered to ill soldiers, resulting in rapid and dramatic resolution. Blood samples taken from 16 cases prior to treatment showed increased levels of erythrocyte transketolase activation coefficient, consistent with thiamine deficiency. With mass thiamine supplementation for healthy troops, the number of subsequent beriberi cases decreased with no further deaths reported. Conclusions: An outbreak of wet beriberi caused by thiamine deficiency due to restricted diet occurred among soldiers in a modern, well-equipped army. Vigilance to ensure adequate micronutrient intake must be a priority in populations completely dependent upon nutritional support from external sources

Analyzing-Power Measurements for (p,n) Reactions

This work was supported by the National Science Foundation Grant NSF PHY 81-14339 and by Indiana Universit

Performance of ACMG-AMP Variant-Interpretation Guidelines among Nine Laboratories in the Clinical Sequencing Exploratory Research Consortium

Evaluating the pathogenicity of a variant is challenging given the plethora of types of genetic evidence that laboratories consider. Deciding how to weigh each type of evidence is difficult, and standards have been needed. In 2015, the American College of Medical Genetics and Genomics (ACMG) and the Association for Molecular Pathology (AMP) published guidelines for the assessment of variants in genes associated with Mendelian diseases. Nine molecular diagnostic laboratories involved in the Clinical Sequencing Exploratory Research (CSER) consortium piloted these guidelines on 99 variants spanning all categories (pathogenic, likely pathogenic, uncertain significance, likely benign, and benign). Nine variants were distributed to all laboratories, and the remaining 90 were evaluated by three laboratories. The laboratories classified each variant by using both the laboratory's own method and the ACMG-AMP criteria. The agreement between the two methods used within laboratories was high (K-alpha = 0.91) with 79% concordance. However, there was only 34% concordance for either classification system across laboratories. After consensus discussions and detailed review of the ACMG-AMP criteria, concordance increased to 71%. Causes of initial discordance in ACMG-AMP classifications were identified, and recommendations on clarification and increased specification of the ACMG-AMP criteria were made. In summary, although an initial pilot of the ACMG-AMP guidelines did not lead to increased concordance in variant interpretation, comparing variant interpretations to identify differences and having a common framework to facilitate resolution of those differences were beneficial for improving agreement, allowing iterative movement toward increased reporting consistency for variants in genes associated with monogenic disease

Evolution of Sex-Specific Traits through Changes in HOX-Dependent doublesex Expression

Analysis in Drosophila suggests that evolutionary changes in the spatial regulation of the transcription factor doublesex play a key role in the origin, diversification, and loss of sex-specific structures