Quantitative Flow Field Imaging about a Hydrophobic Sphere Impacting on a Free Surface

This fluid dynamics video shows the impact of a hydrophobic sphere impacting a water surface. The sphere has a mass ratio of m* = 1.15, a wetting angle of 110 degrees, a diameter of 9.5 mm, and impacts the surface with a Froude number of Fr = 9.2. The first sequence shows an impact of a sphere on the free surface illustrating the formation of the splash crown and air cavity. The cavity grows both in the axial and radial direction until it eventually collapses at a point roughly half of the distance from the free surface to the sphere, which is known as the pinch-off point. The second set of videos shows a sphere impacting the free surface under the same conditions using Particle Image Velocimetry (PIV) to quantify the flow field. A laser sheet illuminates the mid-plane of the sphere, and the fluid is seeded with particles whose motion is captured by a high-speed video camera. Velocity fields are then calculated from the images. The video sequences from left to right depict the radial velocity, the axial velocity, and the vorticity respectively in the flow field. The color bar on the far left indicates the magnitude of the velocity and vorticity. All videos were taken at 2610 fps and the PIV data was processed using a 16 x 16 window with a 50% overlap.Comment: American Physical Society Division of Fluid Dynamics 2008 Annual Meeting Replaced previous version because abstract had LaTex markup and was too long, missing periods on middle initial of first two name

Regulating Signal Enhancement with Coordination-Coupled Deprotonation of a Hydrazone Switch

Proton relay plays an important role in many biocatalytic pathways. In order to mimic such processes in the context of molecular switches, we developed coordination-coupled deprotonation (CCD) driven signaling and signal enhancement sequences. This was accomplished by using the zinc(ii)-initiated CCD of a hydrazone switch to instigate an acid catalyzed imine bond hydrolysis that separates a quencher from a fluorophore thus leading to emission amplification. Because CCD is a reversible process, we were able to show that the catalysis can be regulated and turned “on” and “off” using a metalation/demetalation cycle

The search for CDK4/6 inhibitor biomarkers has been hampered by inappropriate proliferation assays

CDK4/6 inhibitors are effective at treating advanced HR+ /HER2- breast cancer, however biomarkers that can predict response are urgently needed. We demonstrate here that previous large-scale screens designed to identify which tumour types or genotypes are most sensitive to CDK4/6 inhibitors have misrepresented the responsive cell lines because of a reliance on metabolic proliferation assays. CDK4/6-inhibited cells arrest in G1 but continue to grow in size, thereby producing more mitochondria. We show that this growth obscures the arrest using ATP-based proliferation assays but not if DNA-based assays are used instead. Furthermore, lymphoma lines, previously identified as the most sensitive, simply appear to respond the best using ATP-based assays because they fail to overgrow during the G1 arrest. Similarly, the CDK4/6 inhibitor abemaciclib appears to inhibit proliferation better than palbociclib because it also restricts cellular overgrowth through off-target effects. DepMap analysis of screening data using reliable assay types, demonstrates that palbociclib-sensitive cell types are also sensitive to Cyclin D1, CDK4 and CDK6 knockout/knockdown, whereas the palbociclib-resistant lines are sensitive to Cyclin E1, CDK2 and SKP2 knockout/knockdown. Potential biomarkers of palbociclib-sensitive cells are increased expression of CCND1 and RB1, and reduced expression of CCNE1 and CDKN2A. Probing DepMap with similar data from metabolic assays fails to reveal these associations. Together, this demonstrates why CDK4/6 inhibitors, and any other anti-cancer drugs that arrest the cell cycle but permit continued cell growth, must now be re-screened against a wide-range of cell types using an appropriate proliferation assay. This would help to better inform clinical trials and to identify much needed biomarkers of response.</p

Satellite-derived land surface parameters for mesoscale modelling of the Mexico City basin

International audienceMesoscale meteorological modelling is an important tool to help understand air pollution and heat island effects in urban areas. Accurate wind simulations are difficult to obtain in areas of weak synoptic forcing. Local factors have a dominant role in the circulation and include land surface parameters and their interaction with the atmosphere. This paper examines an episode during the MCMA-2003 field campaign held in the Mexico City Metropolitan Area (MCMA) in April of 2003. High resolution satellite observations are used to specify the land use, vegetation fraction, albedo and surface temperature in the MM5 model. Making use of these readily available data leads to improved meteorological simulations in the MCMA, both for the wind circulation patterns and the urban heat island. Replacing values previously obtained from land-use tables with actual measurements removes the number of unknowns in the model and increases the accuracy of the energy budget. In addition to improving the understanding of local meteorology, this sets the stage for the use of advanced urban modules

Distinct wind convergence patterns in the Mexico City basin due to the interaction of the gap winds with the synoptic flow

International audienceMexico City lies in a high altitude basin where air quality and pollutant fate is strongly influenced by local winds. The combination of high terrain with weak synoptic forcing leads to weak and variable winds with complex circulation patterns. A gap wind entering the basin in the afternoon leads to very different wind convergence lines over the city depending on the meteorological conditions. Surface and upper-air meteorological observations are analysed during the MCMA-2003 field campaign to establish the meteorological conditions and obtain an index of the strength and timing of the gap wind. A mesoscale meteorological model (MM5) is used in combination with high-resolution satellite data for the land surface parameters and soil moisture maps derived from diurnal ground temperature range. A simple method to map the lines of wind convergence both in the basin and on the regional scale is used to show the different convergence patterns according to episode types. The gap wind is found to occur on most days of the campaign and is the result of a temperature gradient across the southern basin rim which is very similar from day to day. Momentum mixing from winds aloft into the surface layer is much more variable and can determine both the strength of the flow and the pattern of the convergence zones. Northerly flows aloft lead to a weak jet with an east-west convergence line that progresses northwards in the late afternoon and early evening. Westerlies aloft lead to both stronger gap flows due to channelling and winds over the southern and western basin rim. This results in a north-south convergence line through the middle of the basin starting in the early afternoon. Improved understanding of basin meteorology will lead to better air quality forecasts for the city and better understanding of the chemical regimes in the urban atmosphere

Distinct wind convergence patterns due to thermal and momentum forcing of the low level jet into the Mexico City basin

International audienceMexico City lies in a high altitude basin where air quality and pollutant fate is strongly influenced by local winds. The combination of high terrain with weak synoptic forcing leads to weak and variable winds with complex circulation patterns. A low level jet entering the basin in the afternoon leads to very different wind convergence lines over the city depending on the meteorological conditions. Surface and upper-air meteorological observations are analysed during the MCMA-2003 field campaign to establish the meteorological conditions and obtain an index of the strength and timing of the jet. A mesoscale meteorological model (MM5) is used in combination with high-resolution satellite data for the land surface parameters and soil moisture maps derived from diurnal ground temperature range. A simple method to map the lines of wind convergence both in the basin and on the regional scale is used to show the different convergence patterns according to episode types. The low level jet is found to occur on most days of the campaign and is primarily due to thermal forcing which is very similar from day to day. Momentum mixing from winds aloft into the surface layer is much more variable and can determine both the strength of the jet and the pattern of the convergence zones. Northerly flows aloft lead to a weak jet with an east-west convergence line that progresses northwards in the late afternoon and early evening. Westerlies aloft lead to stronger jets and a north-south convergence line through the middle of the basin starting in the early afternoon. Improved understanding of basin meteorology will lead to better air quality forecasts for the city and better understanding of the chemical regimes in the urban atmosphere

Characterizing ozone production and response under different meteorological conditions in Mexico City

International audienceTropospheric photochemistry, particularly the formation of ozone (O3), depends not only on pollutant emissions, but also on meteorological conditions. In this study a 3-D chemical transport model CAMx was employed to investigate the O3 formation and its response to emission reductions under three distinctively different meteorological conditions ("Cold Surge", "O3-North" and "O3-South") in the Mexico City Metropolitan Area during the MCMA-2003 field measurement campaign. The O3 formation characteristics and sensitivity to emissions changes were found to be weakly dependent on the meteorological conditions. The evolution of O3 formation and sensitivity were also examined along the photochemical plume transport pathway. The midday O3 production was found to undergo a rapid increase in a narrow range of chemical aging, while plumes in the downwind were characterized with low and constant O3 production, and plumes along their transport pathway were featured by a combination of the two. The O3 formation was more VOC sensitive near the source area, but as the plume became chemically aged, O3 formation became progressively VOC insensitive and more NOx sensitive

Characterizing ozone production in the Mexico City Metropolitan Area: a case study using a chemical transport model

International audienceAn episodic simulation is conducted to characterize ozone (O3) photochemical production and investigate its sensitivity to emission changes of ozone precursors in the Mexico City Metropolitan Area (MCMA) using the Comprehensive Air Quality Model with extensions (CAMx). High Ox (O3+NO2) photochemical production rates of 10?80 ppb/h are predicted due to the high reactivity of volatile organic compounds (VOCs) in which alkanes, alkenes, and aromatics exert comparable contributions. The predicted ozone production efficiency is between 4?10 O3 molecules per NOx molecule oxidized, and increases with VOC-to-NO2 reactivity ratio. Process apportionment analyses indicate significant outflow of pollutants such as O3 and peroxyacetyl nitrate (PAN) from the urban area to the surrounding regional environment. PAN is not in chemical-thermal equilibrium during the photochemically active periods. Sensitivity studies of O3 production suggest that O3 formation in the MCMA urban region with less chemical aging (NOz/NOy3 production and its sensitivities to precursors suggest that midday O3 formation during this episode is VOC sensitive in the urban region on the basis of the current emissions inventory. More episodic studies are needed to construct a comprehensive and representative picture of the O3 production characteristics and its response to emission controls

Rapid ventilation of the Mexico City basin and regional fate of the urban plume

International audienceUrban areas can be large emitters of air pollutants leading to negative health effects and environmental degradation. The rate of venting of these airsheds determines the pollutant loading for given emission levels, and also determines the regional impacts of the urban plume. Mexico City has approximately 20 million people living in a high altitude basin with air pollutant concentrations above the health limits most days of the year. A mesoscale meteorological model (MM5) and a particle trajectory model (FLEXPART) are used to simulate air flow within the Mexico City basin and the fate of the urban plume during the MCMA-2003 field campaign. The simulated trajectories are validated against pilot balloon and radiosonde trajectories. The residence time of air within the basin and the impacted areas are identified by episode type. Three specific cases are analysed to identify the meteorological processes involved. For most days, residence times in the basin are less than 12 h with little carry-over from day to day and little recirculation of air back into the basin. Very efficient vertical mixing leads to a vertically diluted plume which, in April, is transported predominantly towards the Gulf of Mexico. Regional accumulation was found to take place for some days however, with urban emissions sometimes staying over Mexico for more than 6 days. Knowledge of the residence times, recirculation patterns and venting mechanisms will be useful in guiding policies for improving the air quality of the MCMA

Using 3DVAR data assimilation system to improve ozone simulations in the Mexico City basin

This study investigates the improvement of ozone (O&lt;sub&gt;3&lt;/sub&gt;) simulations in the Mexico City basin using a three-dimensional variational (3DVAR) data assimilation system in meteorological simulations during the MCMA-2003 field measurement campaign. Meteorological simulations from the NCAR/Penn State mesoscale model (MM5) are used to drive photochemical simulations with the Comprehensive Air Quality Model with extensions (CAMx) during a four-day episode on 13–16 April 2003. The simulated wind circulation, temperature, and humidity fields in the basin with the data assimilation are found to be more consistent with the observations than those from the reference deterministic forecast. This leads to improved simulations of plume position, peak O&lt;sub&gt;3&lt;/sub&gt; timing, and peak O&lt;sub&gt;3&lt;/sub&gt; concentrations in the photochemical model. The improvement in O&lt;sub&gt;3&lt;/sub&gt; simulations is especially strong during the daytime. The results demonstrate the importance of applying data assimilation in meteorological simulations for air quality studies in the Mexico City basin