CELLmicrocosmos 2.2: advancements and applications in modeling of three-dimensional PDB membranes

Sommer B, Dingersen T, Schneider S, Rubert S, Gamroth C. CELLmicrocosmos 2.2: advancements and applications in modeling of three-dimensional PDB membranes (Conference Abstract). In: Journal of Cheminformatics. Journal of Cheminformatics. Vol 2(Suppl 1):O21. Springer Science and Business Media LLC; 2010

CELLmicrocosmos 2.1: a software approach for the modelling of three-dimensional PDB membranes (Conference Abstract)

Sommer B, Dingersen T, Schneider S. CELLmicrocosmos 2.1: a software approach for the modelling of three-dimensional PDB membranes (Conference Abstract). In: Chemistry Central Journal. Chemistry Central Journal. Vol 3(Suppl 1):P72. Springer Science and Business Media LLC; 2009

CELLmicrocosmos 2.1: a software approach for the modelling of three-dimensional PDB membranes (Conference Abstract)

Sommer B, Dingersen T, Schneider S. CELLmicrocosmos 2.1: a software approach for the modelling of three-dimensional PDB membranes (Conference Abstract). In: Chemistry Central Journal. Chemistry Central Journal. Vol 3(Suppl 1):P72. Springer Science and Business Media LLC; 2009

© 2009 Sommer et al; licensee BioMed Central Ltd. Background

CELLmicrocosmos is an approach to develop tools for the generation of virtual cell environments. The CELLmicrocosmos 2 project deals with the computational generation of three-dimensional cell membranes. Biological membranes consist mainly of lipids and proteins. The Protein Data Bank [1] and the HIC-UP database [2] represent a large number of three-dimensional protein and lipid structures, which have been extracted from biological membranes. Other databases contain information about the membrane-type-specific localization of proteins. There exist various approaches of utilizing these models for the computation of membranes. Results Research in many fields of science is dealing with the problem of visualizing, modelling and/or simulatin

Coarse-grained and all-atom MD simulations with Gromacs based on CELLmicrocosmos 2.2 model membranes (Conference Abstract)

Sommer B, Dingersen T, Gamroth C, et al. Coarse-grained and all-atom MD simulations with Gromacs based on CELLmicrocosmos 2.2 model membranes (Conference Abstract). In: Journal of Cheminformatics. Journal of Cheminformatics. Vol 3. Springer Science and Business Media LLC; 2011