Recurrent, low-frequency coding variants contributing to colorectal cancer in the Swedish population

<div><p>Genome-wide association studies (GWAS) have identified dozens of common genetic variants associated with risk of colorectal cancer (CRC). However, the majority of CRC heritability remains unclear. In order to discover low-frequency, high-risk CRC susceptibility variants in Swedish population, we genotyped 1 515 CRC patients enriched for familial cases, and 12 108 controls. Case/control association analysis suggested eight novel variants associated with CRC risk (OR 2.0–17.6, p-value < 2.0E-07), comprised of seven coding variants in genes <i>RAB11FIP5</i>, <i>POTEA</i>, <i>COL27A1</i>, <i>MUC5B</i>, <i>PSMA8</i>, <i>MYH7B</i>, and <i>PABPC1L</i> as well as one variant downstream of <i>NEU1</i> gene. We also confirmed 27 out of 30 risk variants previously reported from GWAS in CRC with a mixed European population background. This study identified rare, coding sequence variants associated with CRC risk through analysis in a relatively homogeneous population. The segregation data suggest a complex mode of inheritance in seemingly dominant pedigrees.</p></div

Distinguishing Amorphous and Crystalline Ice by Ultralow Energy Collisions of Reactive Ions

Ion scattering using ultralow energy projectiles is considered to be a unique method to probe the nature of molecular surfaces because of its capacity to probe the very top, atomically thin layers. Here, we examine one of the most studied molecular solids, water-ice, using this technique. When ice surface undergoes the amorphous to crystalline transition, an ultralow energy reactive projectile identifies the change through the reaction product formed. It is shown that ultralow energy (2, 3, 4, 5, 6, and 7 eV) CH₂⁺ (or CD₂⁺) collision on amorphous D₂O (or H₂O) ice makes CHD⁺, while crystalline ice does not. The projectile undergoes H/D exchange with the dangling −OD (−OH) bond present on amorphous ice surfaces. It is also shown that H/D exchange product disappears when amorphous ice is annealed to the crystalline phase. The H/D exchange reaction is shown to be sensitive only to the surface layers of ice as it disappears when the surface is covered with long chain alcohols like 1-pentanol as the ice surfaces become inaccessible for the incoming projectile. This article shows that ultralow energy reactive ion collision is a novel method to distinguish phase transitions in molecular solids