The Carboxyl-Terminal Segment of Apolipoprotein A-V Undergoes a Lipid-Induced Conformational Change

Apolipoprotein (apo) A-V is a 343-residue, multidomain protein that plays an important role in regulation of plasma triglyceride homeostasis. Primary sequence analysis revealed a unique tetraproline sequence (Pro293-Pro296) near the carboxyl terminus of the protein. A peptide corresponding to the 48-residue segment beyond the tetraproline motif was generated from a recombinant apoA-V precursor wherein Pro295 was replaced by Met. Cyanogen bromide cleavage of the precursor protein, followed by negative affinity chromatography, yielded a purified peptide. Nondenaturing polyacrylamide gel electrophoresis verified that apoA-V(296-343) solubilizes phospholipid vesicles, forming a relatively heterogeneous population of reconstituted high-density lipoprotein with Stokes’ diameters\u3e17 nm. At the same time, apoA-V(296-343) failed to bind a spherical lipoprotein substrate in vitro. Far-UV circular dichroism spectroscopy revealed the peptide is unstructured in buffer yet adopts significant R-helical secondary structure in the presence of the lipid mimetic solvent trifluoroethanol (TFE; 50% v/v). Heteronuclear multidemensional NMR spectroscopy experiments were conducted with uniformly 15N- and 15N/13C-labeled peptide in 50% TFE. Peptide backbone assignment and secondary structure prediction using TALOSþ reveal the peptide adopts R-helix secondary structure from residues 309 to 334. In TFE, apoA-V(296-343) adopts an extended amphipathic R-helix, consistent with a role in lipoprotein binding as a component of full-length apoA-V

Neutron spectroscopic factors of Ni isotopes from transfer reactions

177 neutron spectroscopic factors for nickel isotopes have been extracted by performing a systematic analysis of the angular distributions measured from (d,p) transfer reactions. A subset of the extracted spectroscopic factors are compared to predictions of large-basis shell models in the full pf model space using the GXPF1A effective interaction, and the (f5/2, p3/2, p1/2, g9/2) model space using the JJ4PNA interaction. For ground states, the predicted spectroscopic factors using the GXPF1A effective interaction in the full pf model space agree very well with the experimental values, while predictions based on several other effective interactions and model spaces are about 30% higher than the experimental values. For low-energy excited states (<3.5 MeV), the agreement between the extracted spectroscopic factors and shell model calculations is not better than a factor of two.Comment: 18 pages, 4 figures, 2 tables. accepted for publication in PR

Planetary Science Goals for the Spitzer Warm Era

The overarching goal of planetary astronomy is to deduce how the present collection of objects found in our Solar System were formed from the original material present in the proto-solar nebula. As over two hundred exo-planetary systems are now known, and multitudes more are expected, the Solar System represents the closest and best system which we can study, and the only one in which we can clearly resolve individual bodies other than planets. In this White Paper we demonstrate how to use Spitzer Space Telescope InfraRed Array Camera Channels 1 and 2 (3.6 and 4.5 µm) imaging photometry with large dedicated surveys to advance our knowledge of Solar System formation and evolution. There are a number of vital, key projects to be pursued using dedicated large programs that have not been pursued during the five years of Spitzer cold operations. We present a number of the largest and most important projects here; more will certainly be proposed once the warm era has begun, including important observations of newly discovered objects

Site percolation and random walks on d-dimensional Kagome lattices

The site percolation problem is studied on d-dimensional generalisations of the Kagome' lattice. These lattices are isotropic and have the same coordination number q as the hyper-cubic lattices in d dimensions, namely q=2d. The site percolation thresholds are calculated numerically for d= 3, 4, 5, and 6. The scaling of these thresholds as a function of dimension d, or alternatively q, is different than for hypercubic lattices: p_c ~ 2/q instead of p_c ~ 1/(q-1). The latter is the Bethe approximation, which is usually assumed to hold for all lattices in high dimensions. A series expansion is calculated, in order to understand the different behaviour of the Kagome' lattice. The return probability of a random walker on these lattices is also shown to scale as 2/q. For bond percolation on d-dimensional diamond lattices these results imply p_c ~ 1/(q-1).Comment: 11 pages, LaTeX, 8 figures (EPS format), submitted to J. Phys.

Critical Exponent for the Density of Percolating Flux

This paper is a study of some of the critical properties of a simple model for flux. The model is motivated by gauge theory and is equivalent to the Ising model in three dimensions. The phase with condensed flux is studied. This is the ordered phase of the Ising model and the high temperature, deconfined phase of the gauge theory. The flux picture will be used in this phase. Near the transition, the density is low enough so that flux variables remain useful. There is a finite density of finite flux clusters on both sides of the phase transition. In the deconfined phase, there is also an infinite, percolating network of flux with a density that vanishes as $T \rightarrow T_{c}^{+}$. On both sides of the critical point, the nonanalyticity in the total flux density is characterized by the exponent $(1-\alpha)$. The main result of this paper is a calculation of the critical exponent for the percolating network. The exponent for the density of the percolating cluster is $\zeta = (1-\alpha) - (\varphi-1)$. The specific heat exponent $\alpha$ and the crossover exponent $\varphi$ can be computed in the $\epsilon$-expansion. Since $\zeta < (1-\alpha)$, the variation in the separate densities is much more rapid than that of the total. Flux is moving from the infinite cluster to the finite clusters much more rapidly than the total density is decreasing.Comment: 20 pages, no figures, Latex/Revtex 3, UCD-93-2

The sedimentology of gravel beds in groundwater-dominated chalk streams: Implications for sediment modelling and management

Elevated fine sediment accumulation in a river system's gravel bed is known to cause detrimental ecological impacts. Current sediment targets and approaches to mitigation have failed due to the oversimplification of geomorphological processes controlling fine sediment accumulation and the lack of relevant scientific knowledge underpinning them. This is particularly apparent in chalk streams (groundwater-dominated systems) which regularly exhibit high rates of sediment accumulation despite low suspended sediment yields. A necessary first step is to better characterise their sedimentology; thus, the novelty of this study was to determine the sedimentological characteristics of chalk stream gravel beds, specifically the quantity and distribution of fine sediment with depth. We collated published and unpublished freeze-core data, encompassing 90 sites across 11 UK chalk streams. Results showed average quantities of fine sediment (75% of beds exceeding thresholds for ecological degradation. Quantities of fine sediment increased with increasing depth into the bed, with an average increase between surface and subsurface layers of 54%, and 89% of the gravel bed over-saturated with fine sediment. Regional differences were attributed to differences in stream power and local sediment sources, including surficial geology and catchment land use. Additionally, a major contrast was identified between experimental conditions in flume studies used to establish models describing interactions/mechanisms of fine sediment infiltration into immobile gravel beds and the natural conditions observed in chalk streams. As such, the use of such models as a basis to explore sediment management scenarios is unlikely to predict the outcome of such management techniques correctly in a real-world situation

Complex-Temperature Singularities in the d=2d=2 Ising Model. III. Honeycomb Lattice

We study complex-temperature properties of the uniform and staggered susceptibilities $\chi$ and $\chi^{(a)}$ of the Ising model on the honeycomb lattice. From an analysis of low-temperature series expansions, we find evidence that $\chi$ and $\chi^{(a)}$ both have divergent singularities at the point $z=-1 \equiv z_{\ell}$ (where $z=e^{-2K}$), with exponents $\gamma_{\ell}'= \gamma_{\ell,a}'=5/2$. The critical amplitudes at this singularity are calculated. Using exact results, we extract the behaviour of the magnetisation $M$ and specific heat $C$ at complex-temperature singularities. We find that, in addition to its zero at the physical critical point, $M$ diverges at $z=-1$ with exponent $\beta_{\ell}=-1/4$, vanishes continuously at $z=\pm i$ with exponent $\beta_s=3/8$, and vanishes discontinuously elsewhere along the boundary of the complex-temperature ferromagnetic phase. $C$ diverges at $z=-1$ with exponent $\alpha_{\ell}'=2$ and at $v=\pm i/\sqrt{3}$ (where $v = \tanh K$) with exponent $\alpha_e=1$, and diverges logarithmically at $z=\pm i$. We find that the exponent relation $\alpha'+2\beta+\gamma'=2$ is violated at $z=-1$; the right-hand side is 4 rather than 2. The connections of these results with complex-temperature properties of the Ising model on the triangular lattice are discussed.Comment: 22 pages, latex, figures appended after the end of the text as a compressed, uuencoded postscript fil