Seasonal Changes in the Ratio of Microbial Biomass P to Total P in Soils of Grazed Pastures

Phosphorus (P) utilisation efficiency in pasture soils is higher than in arable soils. Because there is a considerable amount of microbial biomass in the root mat layer, which is peculiar to permanent pasture, the microbial biomass P (MBP) contribution may be important in supplying soil P to pasture plants (Chen et al., 2000; He et al., 1997). In the present study, we investigated seasonal changes in MBP and other forms of P relative to total soil P in two pastures in which P uptake was estimated to be different

3-D effects on viscosity and generation of toroidal and poloidal flows in LHD

Three-dimensional effects on plasma flows have been experimentally studied in the large helical device with 3D configurations. Spontaneous toroidal flow without net driving force using the combination of perpendicular neutral beam injection (NBI) heating and balanced tangential NBI heating has been investigated with two magnetic configurations. Co- and counter-directed spontaneous flows have been observed depending on the collisionality. Toroidal flow shear changes the sign at 0.4<reff<0.6 between co- and counter-flowing plasmas, where reff is a averaged minor radius. The detailed flow structures have been also examined at the edge region with stochastic magnetic field. A poloidal flow driven by the positive radial electric field has been observed at the open field region just outside of the plasma boundary. At the stochastic region, a shear of poloidal flow has been observed, while no shear of toroidal flow has been observed. The toroidal flow shear changes only in the nested magnetic flux surface region. A difference of density fluctuation property has been observed between co- and counter-flowing plasmas, where toroidal flow shears are formed

3-D effects on viscosity and generation of toroidal and poloidal flows in LHD

Three-dimensional effects on plasma flows have been experimentally studied in the large helical device with 3D configurations. Spontaneous toroidal flow without net driving force using the combination of perpendicular neutral beam injection (NBI) heating and balanced tangential NBI heating has been investigated with two magnetic configurations. Co- and counter-directed spontaneous flows have been observed depending on the collisionality. Toroidal flow shear changes the sign at 0.4<r[eff]<0.6 between co- and counter-flowing plasmas, where r[eff] is a averaged minor radius. The detailed flow structures have been also examined at the edge region with stochastic magnetic field. A poloidal flow driven by the positive radial electric field has been observed at the open field region just outside of the plasma boundary. At the stochastic region, a shear of poloidal flow has been observed, while no shear of toroidal flow has been observed. The toroidal flow shear changes only in the nested magnetic flux surface region. A difference of density fluctuation property has been observed between co- and counter-flowing plasmas, where toroidal flow shears are formed

New susceptibility and resistance HLA-DP alleles to HBV-related diseases identified by a trans-ethnic association study in Asia

Previous studies have revealed the association between SNPs located on human leukocyte antigen (HLA) class II genes, including HLA-DP and HLA-DQ, and chronic hepatitis B virus (HBV) infection, mainly in Asian populations. HLA-DP alleles or haplotypes associated with chronic HBV infection or disease progression have not been fully identified in Asian populations. We performed trans-ethnic association analyses of HLA-DPA1, HLA-DPB1 alleles and haplotypes with hepatitis B virus infection and disease progression among Asian populations comprising Japanese, Korean, Hong Kong, and Thai subjects. To assess the association between HLA-DP and chronic HBV infection and disease progression, we conducted high-resolution (4-digit) HLA-DPA1 and HLA-DPB1 genotyping in a total of 3,167 samples, including HBV patients, HBV-resolved individuals and healthy controls. Trans-ethnic association analyses among Asian populations identified a new risk allele HLA-DPB1*09 ratio 01 (P = 1.36 x 10(-6); OR= 1.97; 95% CI, 1.50-2.59) and a new protective allele DPB1*02 ratio 01 (P = 5.22 x 10(-6); OR = 0.68; 95% CI, 0.58-0.81) to chronic HBV infection, in addition to the previously reported alleles. Moreover, DPB1*02 ratio 01 was also associated with a decreased risk of disease progression in chronic HBV patients among Asian populations (P = 1.55 x 10(-7); OR = 0.50; 95% CI, 0.39-0.65). Trans-ethnic association analyses identified Asian-specific associations of HLA-DP alleles and haplotypes with HBV infection or disease progression. The present findings will serve as a base for future functional studies of HLA-DP molecules in order to understand the pathogenesis of HBV infection and the development of hepatocellular carcinoma.published_or_final_versio

Dynamics of ion internal transport barrier in LHD heliotron and JT-60U tokamak plasmas

Dynamics of ion internal transport barrier (ITB) formation and impurity transport both in the Large Helical Device (LHD) heliotron and JT-60U tokamak are described. Significant differences between heliotron and tokamak plasmas are observed. The location of the ITB moves outward during the ITB formation regardless of the sign of magnetic shear in JT-60U and the ITB becomes more localized in the plasma with negative magnetic shear. In LHD, the low T_e/T_i ratio ( < 1) of the target plasma for the high power heating is found to be necessary condition to achieve the ITB plasma and the ITB location tends to expand outward or inward depending on the condition of the target plasmas. Associated with the formation of ITB, the carbon density tends to be peaked due to inward convection in JT-60U, while the carbon density becomes hollow due to outward convection in LHD. The outward convection observed in LHD contradicts the prediction by neoclassical theory

Observation of an impurity hole in a plasma with an ion internal transport barrier in the Large Helical Device

Extremely hollow profiles of impurities (denoted as “impurity hole”) are observed in the plasma with a steep gradient of the ion temperature after the formation of an internal transport barrier (ITB) in the ion temperature transport in the Large Helical Device [A. Iiyoshi et al., Nucl. Fusion 39, 1245 (1999)]. The radial profile of carbon becomes hollow during the ITB phase and the central carbon density keeps dropping and reaches 0.1%?0.3% of plasma density at the end of the ion ITB phase. The diffusion coefficient and the convective velocity of impurities are evaluated from the time evolution of carbon profiles assuming the diffusion and the convection velocity are constant in time after the formation of the ITB. The transport analysis gives a low diffusion of 0.1?0.2 m2/s and the outward convection velocity of ~1 m/s at half of the minor radius, which is in contrast to the tendency in tokamak plasmas for the impurity density to increase due to an inward convection and low diffusion in the ITB region. The outward convection is considered to be driven by turbulence because the sign of the convection velocity contradicts the neoclassical theory where a negative electric field and an inward convection are predicted

Superdense core mode in the Large Helical Device with an internal diffusion barrier

In reduced recycling discharges using a local island divertor in the Large Helical Device [O. Motojima, H. Yamada, A. Komori et al., Phys. Plasmas 6, 1843 (1999)], a stable high-density plasma develops in the core region when a series of pellets is injected. A core region with ~5×10^20 m^?3 and temperature of 0.85 keV is maintained by an internal diffusion barrier (IDB). The density gradient at the IDB (r/a~0.6) is very high, and the particle confinement time in the core region is ~0.4 s. Because of the increase in the central pressure, a large Shafranov shift up to ~0.3 m is observed. The critical ingredients for IDB formation are a strongly pumped divertor to reduce edge recycling, and multiple pellet injection to ensure efficient central fueling. No serious magnetohydrodynamics activity and impurity accumulation have been observed so far in this improved discharge

Evola: Ortholog database of all human genes in H-InvDB with manual curation of phylogenetic trees

Orthologs are genes in different species that evolved from a common ancestral gene by speciation. Currently, with the rapid growth of transcriptome data of various species, more reliable orthology information is prerequisite for further studies. However, detection of orthologs could be erroneous if pairwise distance-based methods, such as reciprocal BLAST searches, are utilized. Thus, as a sub-database of H-InvDB, an integrated database of annotated human genes (http://h-invitational.jp/), we constructed a fully curated database of evolutionary features of human genes, called ‘Evola’. In the process of the ortholog detection, computational analysis based on conserved genome synteny and transcript sequence similarity was followed by manual curation by researchers examining phylogenetic trees. In total, 18 968 human genes have orthologs among 11 vertebrates (chimpanzee, mouse, cow, chicken, zebrafish, etc.), either computationally detected or manually curated orthologs. Evola provides amino acid sequence alignments and phylogenetic trees of orthologs and homologs. In ‘dN/dS view’, natural selection on genes can be analyzed between human and other species. In ‘Locus maps’, all transcript variants and their exon/intron structures can be compared among orthologous gene loci. We expect the Evola to serve as a comprehensive and reliable database to be utilized in comparative analyses for obtaining new knowledge about human genes. Evola is available at http://www.h-invitational.jp/evola/

Measurement of the CP Violation Parameter sin(2phi_1) in B^0_d Meson Decays

We present a measurement of the Standard Model CP violation parameter sin(2phi_1) based on a 10.5 fb^{-1} data sample collected at the Upsilon(4S) resonance with the Belle detector at the KEKB asymmetric e+e- collider. One neutral B meson is reconstructed in the J/psi K_S, psi(2S) K_S, chi_{c1} K_S, eta_c K_S, J/psi K_L or J/psi pi^0 CP-eigenstate decay channel and the flavor of the accompanying B meson is identified from its charged particle decay products. From the asymmetry in the distribution of the time interval between the two B-meson decay points, we determine sin(2phi_1) = 0.58 +0.32-0.34 (stat) +0.09-0.10 (syst).Comment: LaTex, 13 pages, 3 figures, submitted to P.R.