Effects of Burning on Relative Abundances and Morphological Characteristics of Green Tree Frog (Hyla cinerea) in Texas

Wildfires are natural phenomena that can impact native fauna by altering their habitats. In 2011, a large wildfire occurred in 2011 near Bastrop, Texas. Bastrop area is known for its famous Lost Pines region which is a house of many wildlife species including tree frogs. Unfortunately, much of its Lost Pines habitats was destroyed, as a result of wildfire, and will take years to recover. The objective of this study is to compare the relative abundances and morphological characteristics of green tree frogs (Hyla cinerea) in burned areas with those in unburned areas near Bastrop to assess the effect of these fires on green tree frog populations in the area. I will analyze unpublished field data on green tree frogs provided by colleagues at Texas State University. I will test the null hypothesis of no difference in abundances of green tree frogs in burned versus unburned habitats; I expect more green tree frogs in unburned areas

Amplification and sequencing of entire tick mitochondrial genomes for a phylogenomic analysis

The mitochondrial genome (mitogenome) has proven to be important for the taxonomy, systematics, and population genetics of ticks. However, current methods to generate mitogenomes can be costprohibitive at scale. To address this issue, we developed a cost-effective approach to amplify and sequence the whole mitogenome of individual tick specimens. Using two different primer sites, this approach generated two full-length mitogenome amplicons that were sequenced using the Oxford Nanopore Technologies’ Mk1B sequencer. We used this approach to generate 85 individual tick mitogenomes from samples comprised of the three tick families, 11 genera, and 57 species. Twentysix of these species did not have a complete mitogenome available on GenBank prior to this work. We benchmarked the accuracy of this approach using a subset of samples that had been previously sequenced by low-coverage Illumina genome skimming. We found our assemblies were comparable or exceeded the Illumina method, achieving a median sequence concordance of 99.98%. We further analyzed our mitogenome dataset in a mitophylogenomic analysis in the context of all three tick families. We were able to sequence 72 samples in one run and achieved a cost/sample of ~ $10 USD. This cost-effective strategy is applicable for sample identification, taxonomy, systematics, and population genetics for not only ticks but likely other metazoans; thus, making mitogenome sequencing equitable for the wider scientific community.NIH Grants and the Norman E. Borlaug International Agricultural Science and Technology Fellow.http://www.nature.com/scientificreportsam2023Veterinary Tropical Disease

A Simple Conservation Tool to Aid Restoration of Amphibians following High-Severity Wildfires: Use of PVC Pipes by Green Tree Frogs (Hyla cinerea) in Central Texas, USA

Amphibians are the most threatened vertebrate class based on the IUCN Red List. Their decline has been linked to anthropogenic activities, with wildfires being among the most conspicuous agents of habitat alterations affecting native amphibians. In 2011, the most destructive wildfire in Texas history occurred in the Lost Pines ecoregion of central Texas, USA, burning 39% of the 34,400 ha forest and drastically decreasing available habitats for many native wildlife species, including the green tree frog (Hyla cinerea). We investigated use of PVC pipes as artificial refuges for green tree frogs in different habitats within this post-fire pine forest. We monitored green tree frog use of small (diameter 38.1-mm, 1.5 inch) and large (diameter 50.8-mm, 2 inch) pipes located adjacent to, and 5 m from, ponds in burned and unburned areas over a 5-month period. We caught 227 frogs, 101 (24 adults and 77 juveniles) in burned and 126 (61 adults, 63 juveniles, and 2 unknown) in unburned areas. A relationship between pipe use by adults and/or juveniles and pipe location in burned versus unburned areas was found, but pipe use by adults and/or juveniles and pipe size were independent. Pipe use by adults and/or juveniles and pipe size were also independent. Juveniles were more frequently observed in pipes located adjacent to ponds. Our results confirmed that PVC pipes merit consideration as a simple, inexpensive, conservation tool to aid in restoration of green tree frog populations after high-severity wildfires. Such artificial refuges may be particularly important for survival of juveniles in severely altered post-fire habitats

Distribution and prevalence of Sin Nombre hantavirus in rodent species in eastern New Mexico.

Orthohantaviruses are diverse zoonotic RNA viruses. Small mammals, such as mice and rats are common chronic, asymptomatic hosts that transmit the virus through their feces and urine. In North America, hantavirus infection primarily causes hantavirus cardiopulmonary syndrome (HCPS), which has a mortality rate of nearly 36%. In the United States of America, New Mexico (NM) is leading the nation in the number of HCPS-reported cases (N = 129). However, no reported cases of HCPS have occurred within eastern NM. In this study, we assessed the prevalence of Sin Nombre virus (SNV) in rodent assemblages across eastern NM, using RT-qPCR. We screened for potential rodent hosts in the region, as well as identified areas that may pose significant infection risk to humans. We captured and collected blood and lung tissues from 738 rodents belonging to 23 species. 167 individuals from 16 different species were positive for SNV RNA by RT-qPCR, including 6 species unreported in the literature: Onychomys leucogaster (Northern grasshopper mouse), Dipodomys merriami (Merriam's kangaroo rat), Dipodomys ordii (Ord's kangaroo rat), Dipodomys spectabilis (Banner-tailed kangaroo rat), Perognathus flavus (Silky pocket mouse), and Chaetodipus hispidus (Hispid pocket mouse). The infection rates did not differ between sexes or rodent families (i.e., Cricetidae vs. Heteromyidae). Generalized linear model showed that disturbed habitat types positively influenced the prevalence of SNV at sites of survey. Overall, the results of this study indicate that many rodent species in east New Mexico have the potential to maintain SNV in the environment, but further research is needed to assess species specific infectivity mechanisms and potential risk to humans

A Simple Conservation Tool to Aid Restoration of Amphibians following High-Severity Wildfires: Use of PVC Pipes by Green Tree Frogs (<i>Hyla cinerea</i>) in Central Texas, USA

Amphibians are the most threatened vertebrate class based on the IUCN Red List. Their decline has been linked to anthropogenic activities, with wildfires being among the most conspicuous agents of habitat alterations affecting native amphibians. In 2011, the most destructive wildfire in Texas history occurred in the Lost Pines ecoregion of central Texas, USA, burning 39% of the 34,400 ha forest and drastically decreasing available habitats for many native wildlife species, including the green tree frog (Hyla cinerea). We investigated use of PVC pipes as artificial refuges for green tree frogs in different habitats within this post-fire pine forest. We monitored green tree frog use of small (diameter 38.1-mm, 1.5 inch) and large (diameter 50.8-mm, 2 inch) pipes located adjacent to, and 5 m from, ponds in burned and unburned areas over a 5-month period. We caught 227 frogs, 101 (24 adults and 77 juveniles) in burned and 126 (61 adults, 63 juveniles, and 2 unknown) in unburned areas. A relationship between pipe use by adults and/or juveniles and pipe location in burned versus unburned areas was found, but pipe use by adults and/or juveniles and pipe size were independent. Pipe use by adults and/or juveniles and pipe size were also independent. Juveniles were more frequently observed in pipes located adjacent to ponds. Our results confirmed that PVC pipes merit consideration as a simple, inexpensive, conservation tool to aid in restoration of green tree frog populations after high-severity wildfires. Such artificial refuges may be particularly important for survival of juveniles in severely altered post-fire habitats

A bar graph depicting the number of individuals captured per genus during rodent surveys in east New Mexico from March 2020 to May 2021.

A total of 738 rodents were captured from three families (64% Cricetidae, 35% Heteromyidae, and <1% Muridae), across 10 genera, and 23 species.</p

Fig 2 -

Map of the state of New Mexico (left) highlighting counties that have reported cases of hantavirus cardiopulmonary syndrome based on the New Mexico Department of Health data in relation to 20 sites surveyed for rodents across east New Mexico in 2020 and 2021. Map of east New Mexico (right) including the relative proportion of Cricetid and Heteromyid rodents captured across the 20 survey sites. Site numbers correspond to Table 1. Level II Ecoregion GIS data was sourced from the freely available United States Environmental Protection Agency—Ecoregion database (https://www.epa.gov/eco-research/ecoregions-north-america).</p

A summary of RT-qPCR results tested for Sin Nombre Virus (SNV) across all rodents captured during 2020 and 2021 surveys in east New Mexico.

Each species is split according to the sex category. “+” represents the number of positive individuals within the category.</p

Two bar graphs comparing the positivity results between the two detection methods, ELISA and RT-qPCR, used to test for the presence of SNV in rodent samples collected in east New Mexico from March 2020 to May 2021.

Bar graph A compares the prevalence of SNV between species within the Heteromyidae family, while bar graph B compares the prevalence of SNV between species within the Cricetidae family. More samples were detected through RT-qPCR than ELISA, across both families. (TIF)</p