Insertional mutation of the hairless locus on mouse Chromosome 14

Crosses between heterozygous transgenic mice from line 5053 produced offspring with progressive irreversible hair loss beginning at day 10. With increasing age, the skin of these animals became thicker and plicated in appearance. Histological analysis revealed the complete absence of normal hair follicles and numerous intradermic cystic structures, which enlarged with time and became filled with keratinaceous material. Test crosses demonstrated that the affected animals are homozygous for the transgene insertion. The clinicla and histological phenotype of the new mutant closely resembles that of the rhino allele at the hairless locus on Chromosome (Chr) 14. Complementation tests and linkage analysis indicate that the transgene has interrupted the hairless locus. It has been demonstrated previously that mutation at the hr locus is accompanied by a variety of immune deficiencies. Many of the older affected transgenic mice developed an impetigo-like skin eruption which responded to antibiotic ointment and which may reflect impaired immune function. The transgenic allele, hr TgN5053Mm , will be useful for identification of the transcription unit of the hairless locus.Peer Reviewedhttp://deepblue.lib.umich.edu/bitstream/2027.42/47000/1/335_2004_Article_BF00360900.pd

A Robust Parser-Interpreter for Jazz Chord Sequences

Hierarchical structure similar to that associated with prosody and syntax in language can be identified in the rhythmic and harmonic progressions that underlie Western tonal music. Analysing such musical struc-ture resembles natural language parsing: it requires the derivation of an underlying interpretation from an un-structured sequence of highly ambiguous elements— in the case of music, the notes. The task here is not merely to decide whether the sequence is grammati-cal, but rather to decide which among a large number of analyses it has. An analysis of this sort is a part of the cognitive processing performed by listeners familiar with a musical idiom, whether musically trained or not. Our focus is on the analysis of the structure of ex-pectations and resolutions created by harmonic progres-sions. Building on previous work, we define a theory of tonal harmonic progression, which plays a role analo-gous to semantics in language. Our parser uses a formal grammar of jazz chord sequences, of a kind widely used for natural language processing (NLP), to map music, in the form of chord sequences used by performers, onto a representation of the structured relationships between chords. It uses statistical modelling techniques used for wide-coverage parsing in NLP to make practical pars-ing feasible in the face of considerable ambiguity in the grammar. Using machine learning over a small corpus of jazz chord sequences annotated with harmonic anal-yses, we show that grammar-based musical interpreta-tion using simple statistical parsing models is more ac-curate than a baseline HMM. The experiment demon-strates that statistical techniques adapted from NLP can be profitably applied to the analysis of harmonic struc-ture

Characterization of a novel close-to-root papillomavirus from a Florida manatee by using multiply primed rolling-circle amplification: <i>Trichechus manatus latirostris</i> papillomavirus type 1

By using an isothermal multiply primed rolling-circle amplification protocol, the complete genomic DNA of a novel papillomavirus was amplified from a skin lesion biopsy of a Florida manatee (Trichechus manatus latirostris), one of the most endangered marine mammals in United States coastal waters. The nucleotide sequence, genome organization, and phylogenetic position of the Trichechus manatus latirostris papillomavirus type 1 (TmPV-1) were determined. TmPV-1 is the first virus isolated from the order of Sirenia. A phylogenetic analysis shows that TmPV-1 is only distantly related to other papillomavirus sequences, and it appears in our phylogenetic tree as a novel close-to-root papillomavirus genus