Spectral element method for modeling Lamb wave interaction with open and closed crack

Lamb wave-based structural health monitoring is one of the most widely used damage detection techniques. For quantitatively identifying the damage, damage features that Lamb waves carry may need to be carefully studied by numerical simulation. In this paper, spectral element method (SEM) is used to simulate Lamb wave interaction with open and closed crack. Cracked spectral element models are established for open and closed cracks, respectively. Results calculated by SEM are compared with the conventional finite element method to verify the proposed model. Some simulations are conducted to study different damage features between open and closed crack models. Wave reflection and transmission ratios with different crack depths are also quantitatively analyzed. Damage features obtained are used to conduct a simple experiment to identify the location and size of the crack

Lactone Enolates of Isochroman-3-ones and 2‑Coumaranones: Quantification of Their Nucleophilicity in DMSO and Conjugate Additions to Chalcones

Owing to stereoelectronic effects, lactones often deviate in reactivity from their open-chain ester analogues as demonstrated by the CH acidity (in DMSO) of 3-isochromanone (pKa = 18.8) and 2-coumaranone (pKa = 13.5), which is higher than that of ethyl phenylacetate (pKa = 22.6). We have now characterized the reactivity of the lactone enolates derived from 3-isochromanone and 2-coumaranone by following the kinetics of their Michael reactions with p-quinone methides and arylidenemalonates (reference electrophiles) in DMSO at 20 °C. Evaluation of the experimentally determined second-order rate constants k2 by the Mayr–Patz equation, lg k2 = sN(N + E), furnished the nucleophilicity parameters N (and sN) of the lactone enolates. By localizing their position on the Mayr nucleophilicity scale, the scope of their electrophilic reaction partners becomes predictable, and we demonstrate a novel catalytic methodology for a series of carbon–carbon bond-forming reactions of lactone enolates with chalcones under phase transfer conditions in toluene

A Local TR-MUSIC Algorithm for Damage Imaging of Aircraft Structures

Lamb wave-based damage imaging is a promising technique for aircraft structural health monitoring, as enhancing the resolution of damage detection is a persistent challenge. In this paper, a damage imaging technique based on the Time Reversal-MUltiple SIgnal Classification (TR-MUSIC) algorithm is developed to detect damage in plate-type structures. In the TR-MUSIC algorithm, a transfer matrix is first established by exciting and sensing signals. A TR operator is constructed for eigenvalue decomposition to divide the data space into signal and noise subspaces. The structural space spectrum of the algorithm is calculated based on the orthogonality of the two subspaces. A local TR-MUSIC algorithm is proposed to enhance the image quality of multiple damages by using a moving time window to establish the local space spectrum at different times or different distances. The multidamage detection capability of the proposed enhanced TR-MUSIC algorithm is verified by simulations and experiments. The results reveal that the local TR-MUSIC algorithm can not only effectively detect multiple damages in plate-type structures with good image quality but also has a superresolution ability for detecting damage with distances smaller than half the wavelength

Lactone Enolates of Isochroman-3-ones and 2‑Coumaranones: Quantification of Their Nucleophilicity in DMSO and Conjugate Additions to Chalcones

Owing to stereoelectronic effects, lactones often deviate in reactivity from their open-chain ester analogues as demonstrated by the CH acidity (in DMSO) of 3-isochromanone (pKa = 18.8) and 2-coumaranone (pKa = 13.5), which is higher than that of ethyl phenylacetate (pKa = 22.6). We have now characterized the reactivity of the lactone enolates derived from 3-isochromanone and 2-coumaranone by following the kinetics of their Michael reactions with p-quinone methides and arylidenemalonates (reference electrophiles) in DMSO at 20 °C. Evaluation of the experimentally determined second-order rate constants k2 by the Mayr–Patz equation, lg k2 = sN(N + E), furnished the nucleophilicity parameters N (and sN) of the lactone enolates. By localizing their position on the Mayr nucleophilicity scale, the scope of their electrophilic reaction partners becomes predictable, and we demonstrate a novel catalytic methodology for a series of carbon–carbon bond-forming reactions of lactone enolates with chalcones under phase transfer conditions in toluene

Chromosome-level genome map provides insights into diverse defense mechanisms in the medicinal fungus Ganoderma sinense

Fungi have evolved powerful genomic and chemical defense systems to protect themselves against genetic destabilization and other organisms. However, the precise molecular basis involved in fungal defense remain largely unknown in Basidiomycetes. Here the complete genome sequence, as well as DNA methylation patterns and small RNA transcriptomes, was analyzed to provide a holistic overview of secondary metabolism and defense processes in the model medicinal fungus, Ganoderma sinense. We reported the 48.96 Mb genome sequence of G. sinense, consisting of 12 chromosomes and encoding 15,688 genes. More than thirty gene clusters involved in the biosynthesis of secondary metabolites, as well as a large array of genes responsible for their transport and regulation were highlighted. In addition, components of genome defense mechanisms, namely repeat-induced point mutation (RIP), DNA methylation and small RNA-mediated gene silencing, were revealed in G. sinense. Systematic bioinformatic investigation of the genome and methylome suggested that RIP and DNA methylation combinatorially maintain G. sinense genome stability by inactivating invasive genetic material and transposable elements. The elucidation of the G. sinense genome and epigenome provides an unparalleled opportunity to advance our understanding of secondary metabolism and fungal defense mechanisms

Tandem gene duplications drive divergent evolution of caffeine and crocin biosynthetic pathways in plants

Background: Plants have evolved a panoply of specialized metabolites that increase their environmental fitness. Two examples are caffeine, a purine psychotropic alkaloid, and crocins, a group of glycosylated apocarotenoid pigments. Both classes of compounds are found in a handful of distantly related plant genera (Coffea, Camellia, Paullinia, and Ilex for caffeine; Crocus, Buddleja, and Gardenia for crocins) wherein they presumably evolved through convergent evolution. The closely related Coffea and Gardenia genera belong to the Rubiaceae family and synthesize, respectively, caffeine and crocins in their fruits. Results: Here, we report a chromosomal-level genome assembly of Gardenia jasminoides, a crocin-producing species, obtained using Oxford Nanopore sequencing and Hi-C technology. Through genomic and functional assays, we completely deciphered for the first time in any plant the dedicated pathway of crocin biosynthesis. Through comparative analyses with Coffea canephora and other eudicot genomes, we show that Coffea caffeine synthases and the first dedicated gene in the Gardenia crocin pathway, GjCCD4a, evolved through recent tandem gene duplications in the two different genera, respectively. In contrast, genes encoding later steps of the Gardenia crocin pathway, ALDH and UGT, evolved through more ancient gene duplications and were presumably recruited into the crocin biosynthetic pathway only after the evolution of the GjCCD4a gene. Conclusions: This study shows duplication-based divergent evolution within the coffee family (Rubiaceae) of two characteristic secondary metabolic pathways, caffeine and crocin biosynthesis, from a common ancestor that possessed neither complete pathway. These findings provide significant insights on the role of tandem duplications in the evolution of plant specialized metabolism.Published versio