Whole Genomes of Chandipura Virus Isolates and Comparative Analysis with Other Rhabdoviruses

The Chandipura virus (CHPV) belonging to the Vesiculovirus genus and Rhabdoviridae family, has recently been associated with a number of encephalitis epidemics, with high mortality in children, in different parts of India. No full length genome sequences of CHPV isolates were available in GenBank and little is known about the molecular markers for pathogenesis. In the present study, we provide the complete genomic sequences of four isolates from epidemics during 2003–2007. These sequences along with the deduced sequence of the prototype isolate of 1965 were analysed using phylogeny, motif search, homology modeling and epitope prediction methods. Comparison with other rhaboviruses was also done for functional extrapolations. All CHPV isolates clustered with the Isfahan virus and maintained several functional motifs of other rhabdoviruses. A notable difference with the prototype vesiculovirus, Vesicular Stomatitis Virus was in the L-domain flanking sequences of the M protein that are known to be crucial for interaction with host proteins. With respect to the prototype isolate, significant additional mutations were acquired in the 2003–2007 isolates. Several mutations in G mapped onto probable antigenic sites. A mutation in N mapped onto regions crucial for N-N interaction and a putative T-cell epitope. A mutation in the Casein kinase II phosphorylation site in P may attribute to increased rates of phosphorylation. Gene junction comparison revealed changes in the M-G junction of all the epidemic isolates that may have implications on read-through and gene transcription levels. The study can form the basis for further experimental verification and provide additional insights into the virulence determinants of the CHPV

Changes in Polycyclic Aromatic Hydrocarbons (PAHs) and Soil Biological Parameters in a Revegetated Coal Mine Spoil

Coal mining leads to severe land degradation and creates huge amounts of mine spoil. Coal mine spoil contains toxic polycyclic aromatic hydrocarbons (PAHs) derived from coal, which can be alleviated through revegetation with suitable tree species. The present study was aimed at evaluating the impact of different tree species (Albizia lebbeck, Cassia siamea, Delonix regia, and Dalbergia sissoo) on the quality of coal mine spoil and changes in PAH concentration. Soil samples were collected from the revegetated coalmine overburden dumps of Jharia coalfield, Dhanbad, India and analysed by GC-MS for 16 priority PAHs and soil quality parameters were analyzed by standard analytical protocols. Reclamation improved the biological properties of the mine spoil: microbial biomass (+59–176%), dehydrogenase activity (+46–198%), fluorescein diacetate hydrolase activity (+104–127%), phenol oxidase activity (+150–250%), and peroxidase activity (+93–181%). PAH concentration in revegetated mine spoil ranged from 0 • 51 to 1 • 35 mg kg−1, with a significance reduction in total as well as individual PAHs. For individual tree species, total PAH reduction decreased in the order: C. siamea (81 • 6%) > A. lebbeck (55 • 6%) > D. regia (51 • 9%) > D. sissoo (51 • 5%). Correlation analysis showed significant association between the degradation of PAHs and soil biological properties of revegetated site. Microbial biomass carbon and soil enzymes were negatively correlated with PAH content in the mine spoil. But microbial stress indicators like respiration/microbial carbon ratio were not correlated, which revealed no adverse effect of PAH on soil microbes. Principal component analysis revealed that most of the biological parameters were closely associated with the degradation of low molecular weight PAHs