39 research outputs found

    Hemodynamic Data Assimilation in a Subject-specific Circle of Willis Geometry

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    PURPOSE: The anatomy of the circle of Willis (CoW), the brain's main arterial blood supply system, strongly differs between individuals, resulting in highly variable flow fields and intracranial vascularization patterns. To predict subject-specific hemodynamics with high certainty, we propose a data assimilation (DA) approach that merges fully 4D phase-contrast magnetic resonance imaging (PC-MRI) data with a numerical model in the form of computational fluid dynamics (CFD) simulations. METHODS: To the best of our knowledge, this study is the first to provide a transient state estimate for the three-dimensional velocity field in a subject-specific CoW geometry using DA. High-resolution velocity state estimates are obtained using the local ensemble transform Kalman filter (LETKF). RESULTS: Quantitative evaluation shows a considerable reduction (up to 90%) in the uncertainty of the velocity field state estimate after the data assimilation step. Velocity values in vessel areas that are below the resolution of the PC-MRI data (e.g., in posterior communicating arteries) are provided. Furthermore, the uncertainty of the analysis-based wall shear stress distribution is reduced by a factor of 2 for the data assimilation approach when compared to the CFD model alone. CONCLUSION: This study demonstrates the potential of data assimilation to provide detailed information on vascular flow, and to reduce the uncertainty in such estimates by combining various sources of data in a statistically appropriate fashion

    Comparison of pressure reconstruction approaches based on measured and simulated velocity fields

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    The pressure drop over a pathological vessel section can be used as an important diagnostic indicator. However, it cannot be measured non-invasively. Multiple approaches for pressure reconstruction based on velocity information are available. Regarding in-vivo data introducing uncertainty these approaches may not be robust and therefore validation is required. Within this study, three independent methods to calculate pressure losses from velocity fields were implemented and compared: A three dimensional and a one dimensional method based on the Pressure Poisson Equation (PPE) as well as an approach based on the work-energy equation for incompressible fluids (WERP). In order to evaluate the different approaches, phantoms from pure Computational Fluid Dynamics (CFD) simulations and in-vivo PC-MRI measurements were used. The comparison of all three methods reveals a good agreement with respect to the CFD pressure solutions for simple geometries. However, for more complex geometries all approaches lose accuracy. Hence, this study demonstrates the need for a careful selection of an appropriate pressure reconstruction algorithm

    Phase-Contrast MRI Detection of Ventricular Shunt CSF Flow: Proof of Principle

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    BACKGROUND AND PURPOSE: The evaluation of a suspected malfunction of a ventricular shunt is a common procedure in neurosurgery. The evaluation relies on either the interpretation of the ventricular width using cranial imaging or invasive techniques. Several attempts have been made to measure the flow velocity of cerebrospinal fluid (CSF) utilizing different phase-contrast magnet resonance imaging (PC MRI) techniques. In the present study, we evaluated 3 T (Tesla) MRI scanners for their effectiveness in determining of flow in the parenchymal portion of ventricular shunt systems with adjustable valves containing magnets. METHODS: At first, an MRI phantom was used to measure the phase-contrasts at different constant low flow rates. The next step was to measure the CSF flow in patients treated with ventricular shunts without suspected malfunction of the shunt under observation. RESULTS: The measurements of the phantom showed a linear correlation between the CSF flow and corresponding phase values. Despite many artifacts resulting from the magnetic valves, the ventricular catheter within the parenchymal portion of shunt was not superimposed by artifacts at each PC MRI plane and clearly distinguishable in 9 of 12 patients. Three patients suffering from obstructive hydrocephalus showed a clear flow signal. CONCLUSION: CSF flow detected within the parenchymal portion of the shunt by PC MRI may reliably provide information about the functional status of a ventricular shunt. Even in patients whose hydrocephalus was treated with magnetic adjustable valves, the CSF flow was detectable using PC MRI sequences at 3 T field strength

    Quantitative evaluation of prospective motion correction in healthy subjects at 7T MRI

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    PURPOSE: Quantitative assessment of prospective motion correction (PMC) capability at 7T MRI for compliant healthy subjects to improve high-resolution images in the absence of intentional motion. METHODS: Twenty-one healthy subjects were imaged at 7 T. They were asked not to move, to consider only unintentional motion. An in-bore optical tracking system was used to monitor head motion and consequently update the imaging volume. For all subjects, high-resolution T1 (3D-MPRAGE), T2 (2D turbo spin echo), proton density (2D turbo spin echo), and T∗2 (2D gradient echo) weighted images were acquired with and without PMC. The images were evaluated through subjective and objective analysis. RESULTS: Subjective evaluation overall has shown a statistically significant improvement (5.5%) in terms of image quality with PMC ON. In a separate evaluation of every contrast, three of the four contrasts (T1 , T2 , and proton density) have shown a statistically significant improvement (9.62%, 9.85%, and 9.26%), whereas the fourth one ( T∗2) has shown improvement, although not statistically significant. In the evaluation with objective metrics, average edge strength has shown an overall improvement of 6% with PMC ON, which was statistically significant; and gradient entropy has shown an overall improvement of 2%, which did not reach statistical significance. CONCLUSION: Based on subjective assessment, PMC improved image quality in high-resolution images of healthy compliant subjects in the absence of intentional motion for all contrasts except T∗2, in which no significant differences were observed. Quantitative metrics showed an overall trend for an improvement with PMC, but not all differences were significant

    Hippocampal vascularization patterns: A high-resolution 7 Tesla time-of-flight magnetic resonance angiography study

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    Considerable evidence suggests a close relationship between vascular and degenerative pathology in the human hippocampus. Due to the intrinsic fragility of its vascular network, the hippocampus appears less able to cope with hypoperfusion and anoxia than other cortical areas. Although hippocampal blood supply is generally provided by the collateral branches of the posterior cerebral artery (PCA) and the anterior choroidal artery (AChA), different vascularization patterns have been detected postmortem. To date, a methodology that enables the classification of individual hippocampal vascularization patterns in vivo has not been established. In this study, using high-resolution 7 Tesla time-of-flight angiography data (0.3 mm isotropic resolution) in young adults, we classified individual variability in hippocampal vascularization patterns involved in medial temporal lobe blood supply in vivo. A strong concordance between our classification and previous autopsy findings was found, along with interesting anatomical observations, such as the variable contribution of the AChA to hippocampal supply, the relationships between hippocampal and PCA patterns, and the different distribution patterns of the right and left hemispheres. The approach presented here for determining hippocampal vascularization patterns in vivo may provide new insights into not only the vulnerability of the hippocampus to vascular and neurodegenerative diseases but also hippocampal vascular plasticity after exercise training. Keywords: 7 T MRI, Hippocampal vascularization, Hippocampus, MR angiography, Neuroanatom

    Dental brace and MPT marker.

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    <p>An individually manufactured dental brace (A) was worn by the subject during the measurement. A passive marker similar to the one shown in (B) was mounted on the brace’s extension reaching out of the helmet-design head coil. Planar grating patterns were printed on both sites of a transparent substrate forming moiré patterns. The retro reflective background of the marker ensured visibility to the camera and lighting unit (CLU) at low light exposure levels.</p

    In vivo MRI scans: amount of motion during the scans.

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    <p>Standard deviation and absolute range of the X-, Y- and Z- translations and rotations measured by the tracking system for all in vivo scans.</p><p>In vivo MRI scans: amount of motion during the scans.</p
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