6 research outputs found

    Skillings-Mack and Wilcoxon signed-rank test (with Bonferroni adjustment) for FOXP3 data (see Table 2).

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    <p>Skillings-Mack and Wilcoxon signed-rank test (with Bonferroni adjustment) for FOXP3 data (see <a href="http://www.plosone.org/article/info:doi/10.1371/journal.pone.0039368#pone-0039368-t002" target="_blank">Table 2</a>).</p

    T cells expressing FOXP3.

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    <p>(<b>A</b>) Example of plots showing gate settings. (<b>B</b>) The frequency of FOXP3<sup>+</sup> T cells at different time points, gating on CD3<sup>+</sup> T cells. (<b>C</b>) Inverse correlation between the frequencies of FOXP3<sup>+</sup> Treg and CEF-specific TNFα/IFNγ dual functional T cells.</p

    Gating strategy and example of ICS data.

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    <p>(<b>A</b>) Lymphocytes were gated based on FSC and SSC, followed by a CD3<sup>+</sup>ViViD<sup>−</sup> viable T cell gate. (<b>B</b>) Example of data from PT#3, depicting typical positive (6×CTL, core antigen) and negative (E1E2 antigen) responses following DC infusion compared to baseline. (<b>C</b>) These plots are derived from the same data as the core antigen response at week 2 (W2), depicting the cellular source of the cytokines. The 1<sup>st</sup> plot (left) shows cytokine positive cells (red) within viable CD3 T cells (grey), the 2<sup>nd</sup> plot shows the position of the CD4<sup>+</sup> and CD8<sup>+</sup> T cell gates, and the 3<sup>rd</sup> and 4<sup>th</sup> plots depict the cytokine staining profiles of CD4<sup>+</sup> T cells and CD8<sup>+</sup> T cells respectively.</p

    Cytokine positive responses - a complete dataset from all patients.

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    <p>(<b>A</b>) Cytokine producer frequency (%, gating on viable CD3<sup>+</sup> T cells) at baseline and different time points thereafter. The numbers on the x-axis (1, 2, 3, 4, 5 and 6) are the patient ID. Abbreviations: BL = Base Line; PI-2 = Prior to 2<sup>nd</sup> Infusion; PI-3 = Prior to 3<sup>rd</sup> Infusion, W = Week post final infusion. (<b>B</b>) The normalised MFI, corresponding to the responses detected in (A). (<b>C</b>) T cell quality in PT#4 and PT#5, depicted by the normalised MFI of cytokine positive responses. (<b>D</b>) The frequency (%) and normalised MFI over time in PT#3. (<b>E</b>) The dose and timing of DC infusion each patient received and the timing of sample collection. (<b>F</b>) Contribution of CD4 and CD8 T cells (please note the differences in scale) to the cytokine positive responses in PT#3.</p
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