GSE37704_featurecounts.csv

Gene expression data</p

Bioinformatics Training Resources

<p>Markdown source, PDF, and HTML rendering of bioinformatics training resources from http://stephenturner.us/p/edu.</p

Knowledge-Driven Genome-Wide Analysis of Multigenic Interactions Impacting HDL Cholesterol Level

<p>My 2010 Ph.D. thesis: <em>Knowledge-Driven Genome-Wide Analysis of Multigenic Interactions Impacting HDL Cholesterol Level.</em> Also available at the link below.</p> <p><em><br></em></p

RNA-seq workflows

<p>Example workflow diagrams for RNA-seq data analysis. First page: workflow for count-based analysis of differential gene expression. Second page: workflows for differential isoform expression, and differential exon usage. </p

qqman

<p>R code for creating Manhattan plots and Q-Q plots for GWAS</p

Poster: Knowledge-driven multi-locus analysis reveals gene-gene interactions influencing HDL cholesterol level in two independent biobanks

<p>Poster from 2010 International Genetic Epidemiology Society Meeting. Later published in PLoS ONE at the link below.</p

Bioinformatics Cores & New Technologies: The evolving role of 21st Century Bioinformatics Core Facilities

<p>Slides presented at the first annual ABRF MADSSCi Meeting (http://madssci.my.abrf.org/), June 2013.</p

Tutorial: RNA-seq differential expression & pathway analysis with Sailfish, DESeq2, GAGE, and Pathview

<p>Tutorial for doing RNA-seq differential gene expression analysis with DESeq2 from gene-level quantification using Sailfish, with a downstream pathway analysis using GAGE. Data used here is pre-processed data available on figshare.</p

Introduction to R Cheat Sheet

<p>R cheat sheet for an introduction to R workshop taught by Stephen Turner at the University of Virginia</p

Examining Gene Expression and Methylation with Next-Gen Sequencing

<p>Slides on RNA-seq and methylation studies using next-gen sequencing given at the University of Miami Hussman Institute for Human Genomics "Genetic Analysis of Complex Human Diseases" course in 2013 </p