Metastable tight knots in a worm-like polymer

Based on an estimate of the knot entropy of a worm-like chain we predict that the interplay of bending energy and confinement entropy will result in a compact metastable configuration of the knot that will diffuse, without spreading, along the contour of the semi-flexible polymer until it reaches one of the chain ends. Our estimate of the size of the knot as a function of its topological invariant (ideal aspect ratio) agrees with recent experimental results of knotted dsDNA. Further experimental tests of our ideas are proposed.Comment: 4 pages, 3 figure

Gel Electrophoresis of DNA Knots in Weak and Strong Electric Fields

Gel electrophoresis allows to separate knotted DNA (nicked circular) of equal length according to the knot type. At low electric fields, complex knots being more compact, drift faster than simpler knots. Recent experiments have shown that the drift velocity dependence on the knot type is inverted when changing from low to high electric fields. We present a computer simulation on a lattice of a closed, knotted, charged DNA chain drifting in an external electric field in a topologically restricted medium. Using a simple Monte Carlo algorithm, the dependence of the electrophoretic migration of the DNA molecules on the type of knot and on the electric field intensity was investigated. The results are in qualitative agreement with electrophoretic experiments done under conditions of low and high electric fields: especially the inversion of the behavior from low to high electric field could be reproduced. The knot topology imposes on the problem the constrain of self-avoidance, which is the final cause of the observed behavior in strong electric field.Comment: 17 pages, 5 figure

Promotion of cultural heritage — regional and traditional Polish meat products

The diverse culinary heritage of various countries in the European Union (EU) has been attracting attention for a very long time. This type of high-quality traditional food should be fully exploited and promoted as a common good that is part of the history of given countries. In order to distinguish individual products and their value (not only cultural, but also qualitative), the EU created special awarding signs (quality schemes) that conform to the quality of traditional products: Protected Designation of Origin (PDO), Protected Geographical Indication (PGI), or Traditional Speciality Guaranteed (TSG). One of the first associations with Polish cuisine would undoubtedly be meat dishes, which play an important role in preserving the tradition. The most popular types of meat in Poland are pork, beef, and then poultry. In addition, game animals are very popular, including wild birds (black grouse and larks). This type of dishes is prepared according to traditional recipes handed down from generation to generation. Products typical of the region obtained from local crops and animal breeding are used in their preparation. Thanks to this, traditional dishes acquire specific taste values, which cannot be recreated in other parts of the country

Cross-Component Energy Transfer in Superfluid Helium-4

\ua9 2024, Crown.The reciprocal energy and enstrophy transfers between normal fluid and superfluid components dictate the overall dynamics of superfluid 4He including the generation, evolution and coupling of coherent structures, the distribution of energy among lengthscales, and the decay of turbulence. To better understand the essential ingredients of this interaction, we employ a numerical two-way model which self-consistently accounts for the back-reaction of the superfluid vortex lines onto the normal fluid. Here we focus on a prototypical laminar (non-turbulent) vortex configuration which is simple enough to clearly relate the geometry of the vortex line to energy injection and dissipation to/from the normal fluid: a Kelvin wave excitation on two vortex anti-vortex pairs evolving in (a) an initially quiescent normal fluid, and (b) an imposed counterflow. In (a), the superfluid injects energy and vorticity in the normal fluid. In (b), the superfluid gains energy from the normal fluid via the Donnelly–Glaberson instability

Effects of physiological self-crowding of DNA on shape and biological properties of DNA molecules with various levels of supercoiling.

DNA in bacterial chromosomes and bacterial plasmids is supercoiled. DNA supercoiling is essential for DNA replication and gene regulation. However, the density of supercoiling in vivo is circa twice smaller than in deproteinized DNA molecules isolated from bacteria. What are then the specific advantages of reduced supercoiling density that is maintained in vivo? Using Brownian dynamics simulations and atomic force microscopy we show here that thanks to physiological DNA-DNA crowding DNA molecules with reduced supercoiling density are still sufficiently supercoiled to stimulate interaction between cis-regulatory elements. On the other hand, weak supercoiling permits DNA molecules to modulate their overall shape in response to physiological changes in DNA crowding. This plasticity of DNA shapes may have regulatory role and be important for the postreplicative spontaneous segregation of bacterial chromosomes

The effectiveness of SPARX, a computerised self help intervention for adolescents seeking help for depression: randomised controlled non-inferiority trial

Objective To evaluate whether a new computerised cognitive behavioural therapy intervention (SPARX, Smart, Positive, Active, Realistic, X-factor thoughts) could reduce depressive symptoms in help seeking adolescents as much or more than treatment as usual

Influence of bamboo Guadua aff. paraguayana Doll (Poaceae) on the radial increment of Sebastiana commersoniana trees in remnant of a Mixed Ombrophilous Alluvial forests in southern Brazil.

WorldDendro 2010

In Vivo Assessment of Parenteral Formulations of Oligo(3-Hydroxybutyric Acid) Conjugates with the Model Compound Ibuprofen

Polymer-drug conjugates have gained significant attention as pro-drugs releasing an active substance as a result of enzymatic hydrolysis in physiological environment. In this study, a conjugate of 3-hydroxybutyric acid oligomers with a carboxylic acid group-bearing model drug (ibuprofen) was evaluated in vivo as a potential pro-drug for parenteral administration. Two different formulations, an oily solution and an o/w emulsion were prepared and administered intramuscularly (IM) to rabbits in a dose corresponding to 40 mg of ibuprofen/kilogramme. The concentration of ibuprofen in blood plasma was analysed by HPLC, following solid–phase extraction and using indometacin as internal standard (detection limit, 0.05 μg/ml). No significant differences in the pharmacokinetic parameters (Cmax, Tmax, AUC) were observed between the two tested formulations of the 3-hydroxybutyric acid conjugate. In comparison to the non-conjugated drug in oily solution, the relative bioavailability of ibuprofen conjugates from oily solution, and o/w emulsion was reduced to 17% and 10%, respectively. The 3-hydroxybutyric acid formulations released the active substance over a significantly extended period of time with ibuprofen still being detectable 24 h post-injection, whereas the free compound was almost completely eliminated as early as 6 h after administration. The conjugates remained in a muscle tissue for a prolonged time and can hence be considered as sustained release systems for carboxylic acid derivatives

Influência da densidade de semeadura nas características agronômicas de cultivares de girassol.

RESUMO: O presente trabalho teve como objetivo avaliar a influência de densidades de semeadura de genótipos de girassol em suas características agronômicas. O experimento foi realizado no campo experimental do IFMT, Campus Campo Novo do Parecis - MT, entre os meses de fevereiro e junho de 2015. O delineamento experimental utilizado foi de blocos casualizados, em esquema fatorial 5 x 5, sendo cinco genótipos de girassol AGUARÁ 04, GNZ NEON, HÉLIO 251, SYN 045 e SYN 3950HO) e cinco populações de plantas (30.000, 37.500, 45.000, 52.500 e 60.000 plantas ha-1), com 3 repetições. Foram analisadas as características altura de planta, diâmetro da haste, tamanho do capítulo, massa de mil aquênios e produtividade de aquênios. Os dados obtidos foram submetidos à análise de variância, seguido de teste Tukey para cultivares e análise de regressão para as diferentes populações de plantas (p<0,05). O genótipo SYN 045 apresentou a maior produtividade de aquênios, 1.708,90 kg ha-1 enquanto que a população de 60.150 plantas ha-1 foi a que possibilitou a maior produtividade de aquênios, 2.391,92 kg ha-1. ABSTRACT: This study aimed to evaluate the influence of sowing density of sunflower genotypes on their agronomic characteristics. The experiment was conducted in the experimental field of IFMT, Campus Campo Novo do Parecis - MT, between February and June 2015. The experimental design was randomized blocks in a factorial 5 x 5, five sunflower genotypes (AGUARÁ 04, GNZ NEON, HÉLIO 251, SYN 045 and SYN 3950HO) and five plant populations (30,000, 37,500, 45,000, 52,500 and 60,000 plants ha-1) with 3 repetitions. Plant height, stem diameter, chapter length, mass thousand achenes and achenes productivity were analyzed. The data were submitted to analysis of variance followed by Tukey test for cultivars and regres.

Field-theoretic simulation of block copolymers at experimentally-relevant molecular weights

Field-theoretic simulation (FTS) offers an efficient means of predicting the equilibrium behavior of high-molecular-weight structured polymers, provided one is able to deal with the strong ultraviolet (UV) divergence that occurs at realistic molecular weights. Here melts of lamellar-forming diblock copolymer are studied using a Monte Carlo version (MC-FTS), where the composition field fluctuates while the pressure field follows the mean-field approximation. We are able to control the UV divergence by introducing a new effective Flory-Huggins interaction parameter, $\chi_e$, thereby permitting MC-FTS for molecular weights extending down to values characteristic of experiment. Results for the disordered-state structure function, the layer spacing and compressibility of the ordered lamellar phase, and the position of the order-disorder transition (ODT) show excellent agreement with recent particle-based simulation. Given the immense versatility of FTS, this opens up the opportunity for quantitative studies on a wide range of more complicated block copolymer systems