On the equivalence between the cell-based smoothed finite element method and the virtual element method

We revisit the cell-based smoothed finite element method (SFEM) for quadrilateral elements and extend it to arbitrary polygons and polyhedrons in 2D and 3D, respectively. We highlight the similarity between the SFEM and the virtual element method (VEM). Based on the VEM, we propose a new stabilization approach to the SFEM when applied to arbitrary polygons and polyhedrons. The accuracy and the convergence properties of the SFEM are studied with a few benchmark problems in 2D and 3D linear elasticity. Later, the SFEM is combined with the scaled boundary finite element method to problems involving singularity within the framework of the linear elastic fracture mechanics in 2D

Controlling the Error on Target Motion through Real-time Mesh Adaptation: Applications to Deep Brain Stimulation

We present an error-controlled mesh refinement procedure for needle insertion simulation and apply it to the simulation of electrode implantation for deep brain stimulation, including brain shift. Our approach enables to control the error in the computation of the displacement and stress fields around the needle tip and needle shaft by suitably refining the mesh, whilst maintaining a coarser mesh in other parts of the domain. We demonstrate through academic and practical examples that our approach increases the accuracy of the displacement and stress fields around the needle without increasing the computational expense. This enables real-time simulations. The proposed methodology has direct implications to increase the accuracy and control the computational expense of the simulation of percutaneous procedures such as biopsy, brachytherapy, regional anesthesia, or cryotherapy and can be essential to the development of robotic guidance.Comment: 21 pages, 14 figure

MAgNET: A Graph U-Net Architecture for Mesh-Based Simulations

Mesh-based approaches are fundamental to solving physics-based simulations, however, they require significant computational efforts, especially for highly non-linear problems. Deep learning techniques accelerate physics-based simulations, however, they fail to perform efficiently as the size and complexity of the problem increases. Hence in this work, we propose MAgNET: Multi-channel Aggregation Network, a novel geometric deep learning framework for performing supervised learning on mesh-based graph data. MAgNET is based on the proposed MAg (Multichannel Aggregation) operation which generalises the concept of multi-channel local operations in convolutional neural networks to arbitrary non-grid inputs. MAg can efficiently perform non-linear regression mapping for graph-structured data. MAg layers are interleaved with the proposed novel graph pooling operations to constitute a graph U-Net architecture that is robust, handles arbitrary complex meshes and scales efficiently with the size of the problem. Although not limited to the type of discretisation, we showcase the predictive capabilities of MAgNET for several non-linear finite element simulations

Parametrized reduced order modeling for cracked solids

A parametrized reduced order modeling methodology for cracked two dimensional solids is presented, where the parameters correspond to geometric properties of the crack, such as location and size. The method follows the offline‐online paradigm, where in the offline, training phase, solutions are obtained for a set of parameter values, corresponding to specific crack configurations and a basis for a lower dimensional solution space is created. Then in the online phase, this basis is used to obtain solutions for configurations that do not lie in the training set. The use of the same basis for different crack geometries is rendered possible by defining a reference configuration and employing mesh morphing to map the reference to different target configurations. To enable the application to complex geometries, a mesh morphing technique is introduced, based on inverse distance weighting, which increases computational efficiency and allows for special treatment of boundaries. Applications in linear elastic fracture mechanics are considered, with the extended finite element method being used to represent discontinuous and asymptotic fields.ISSN:1097-0207ISSN:0029-598

Colossal Atomic Force Response in van der Waals Materials Arising From Electronic Correlations

Understanding static and dynamic phenomena in complex materials at different length scales requires reliably accounting for van der Waals (vdW) interactions, which stem from long-range electronic correlations. While the important role of many-body vdW interactions has been extensively documented when it comes to the stability of materials, much less is known about the coupling between vdW interactions and atomic forces. Here we analyze the Hessian force response matrix for a single and two vdW-coupled atomic chains to show that a many-body description of vdW interactions yields atomic force response magnitudes that exceed the expected pairwise decay by 3-5 orders of magnitude for a wide range of separations between the perturbed and the observed atom. Similar findings are confirmed for graphene and carbon nanotubes. This colossal force enhancement suggests implications for phonon spectra, free energies, interfacial adhesion, and collective dynamics in materials with many interacting atoms

A volume-averaged nodal projection method for the Reissner-Mindlin plate model

We introduce a novel meshfree Galerkin method for the solution of Reissner-Mindlin plate problems that is written in terms of the primitive variables only (i.e., rotations and transverse displacement) and is devoid of shear-locking. The proposed approach uses linear maximum-entropy approximations and is built variationally on a two-field potential energy functional wherein the shear strain, written in terms of the primitive variables, is computed via a volume-averaged nodal projection operator that is constructed from the Kirchhoff constraint of the three-field mixed weak form. The stability of the method is rendered by adding bubble-like enrichment to the rotation degrees of freedom. Some benchmark problems are presented to demonstrate the accuracy and performance of the proposed method for a wide range of plate thicknesses

Convolution, aggregation and attention based deep neural networks for accelerating simulations in mechanics

Deep learning surrogate models are being increasingly used in accelerating scientific simulations as a replacement for costly conventional numerical techniques. However, their use remains a significant challenge when dealing with real-world complex examples. In this work, we demonstrate three types of neural network architectures for efficient learning of highly non-linear deformations of solid bodies. The first two architectures are based on the recently proposed CNN U-NET and MAgNET (graph U-NET) frameworks which have shown promising performance for learning on mesh-based data. The third architecture is Perceiver IO, a very recent architecture that belongs to the family of attention-based neural networks--a class that has revolutionised diverse engineering fields and is still unexplored in computational mechanics. We study and compare the performance of all three networks on two benchmark examples, and show their capabilities to accurately predict the non-linear mechanical responses of soft bodies

Multi-compartment poroelastic models of perfused biological soft tissues: implementation in FEniCSx

Soft biological tissues demonstrate strong time-dependent and strain-rate mechanical behavior, arising from their intrinsic visco-elasticity and fluid-solid interactions (especially at sufficiently large time scales). The time-dependent mechanical properties of soft tissues influence their physiological functions and are linked to several pathological processes. Poro-elastic modeling represents a promising approach because it allows the integration of multiscale/multiphysics data to probe biologically relevant phenomena at a smaller scale and embeds the relevant mechanisms at the larger scale. The implementation of multi-phasic flow poro-elastic models however is a complex undertaking, requiring extensive knowledge. The open-source software FEniCSx Project provides a novel tool for the automated solution of partial differential equations by the finite element method. This paper aims to provide the required tools to model the mixed formulation of poro-elasticity, from the theory to the implementation, within FEniCSx. Several benchmark cases are studied. A column under confined compression conditions is compared to the Terzaghi analytical solution, using the L2-norm. An implementation of poro-hyper-elasticity is proposed. A bi-compartment column is compared to previously published results (Cast3m implementation). For all cases, accurate results are obtained in terms of a normalized Root Mean Square Error (RMSE). Furthermore, the FEniCSx computation is found three times faster than the legacy FEniCS one. The benefits of parallel computation are also highlighted.Comment: https://github.com/Th0masLavigne/Dolfinx_Porous_Media.gi