High-level synthesis design of scalable ultrafast ultrasound beamformer with single FPGA

Ultrafast ultrasound imaging is essential for advanced ultrasound imaging techniques such as ultrasound localization microscopy (ULM) and functional ultrasound (fUS). Current ultrafast ultrasound imaging is challenged by the ultrahigh data bandwidth associated with the radio frequency (RF) signal, and by the latency of the computationally expensive beamforming process. As such, continuous ultrafast data acquisition and beamforming remain elusive with existing software beamformers based on CPUs or GPUs. To address these challenges, the proposed work introduces a novel method of implementing an ultrafast ultrasound beamformer specifically for ultrafast plane wave imaging (PWI) on a field programmable gate array (FPGA) by using high-level synthesis. A parallelized implementation of the beamformer on a single FPGA was proposed by 1) utilizing a delay compression technique to reduce the delay profile size, which enables both run-time pre-calculated delay profile loading from external memory and delay reuse 2) vectorizing channel data fetching which is enabled by delay reuse, and 3) using fixed summing networks to reduce consumption of logic resources. Our proposed method presents two unique advantages over current FPGA beamformers: 1) high scalability that allows fast adaptation to different FPGA resources and beamforming speed demands by using Xilinx High-Level Synthesis as the development tool, and 2) allow a compact form factor design by using a single FPGA to complete the beamforming instead of multiple FPGAs. With the proposed method, a sustainable average beamforming rate of 4.83 G samples/second in terms of input raw RF sample was achieved. The resulting image quality of the proposed beamformer was compared with the software beamformer on the Verasonics Vantage system for both phantom imaging and in vivo imaging of a mouse brain

Selective phase transformation of layered double hydroxides into mixed metal oxides for catalytic CO oxidation

Phase transformation from layered double hydroxides (LDHs) into mixed metal oxides (MMOs) has been widely used in various catalytic applications owing to its numerous advantages over conventional synthesis methods. Herein we report the results of selective phase transformation of LDHs into spinels and delafossites for the preparation of phase-pure MMO catalysts. Pure cuprous delafossites and cupric spinels were selectively obtained through heat treatment of Cu-based LDHs followed by post-treatments. This enabled the study of the crystalline-phase-dependent CO oxidation activity of the MMO catalysts and their physicochemical properties. The spinel catalysts exhibited higher CO oxidation activities, in comparison with those of the delafossites, with greater redox properties and improved active sites for CO adsorption. Although the crystalline phases were derived from the same LDH precursors, the catalytic properties of the end product were greatly influenced by their crystal structures

High tumor hexokinase-2 expression promotes a pro-tumorigenic immune microenvironment by modulating CD8+/regulatory T-cell infiltration

Background Relationship between cancer cell glycolysis and the landscape of tumor immune microenvironment in human cancers was investigated. Methods Forty-one fresh lung adenocarcinoma (ADC) tissues were analyzed using flow cytometry for comprehensive immunoprofiling. Formalin-fixed tissues were immunostained for hexokinase-2 (HK2) to assess cancer cell glycolysis. For validation, formalin-fixed tissues from 375 lung ADC, 118 lung squamous cell carcinoma (SqCC), 338 colon ADC, and 78 lung cancer patients treated with anti-PD-1/PD-L1 immunotherapy were immunostained for HK2, CD8, and FOXP3. Results Based on immunoprofiling of lung ADC, HK2 tumor expression was associated with the composition of lymphoid cells rather than myeloid cells. High HK2 tumor expression was associated with immunosuppressive/pro-tumorigenic features, especially decreased ratio of CD8 + T-cells to Tregs (rho = −0.415, P = 0.012). This correlation was also confirmed in four different cohorts including lung ADC and SqCC, colon ADC, and the immunotherapy cohort (rho = −0.175~-0.335, all P < 0.05). A low CD8 + T-cell to Treg ratio was associated with poor progression-free survival and overall survival in lung SqCC patients, and a shorter overall survival in the immunotherapy cohort (all, P < 0.05). Conclusion An increase in HK2 expression may contribute to shaping the immunosuppressive/pro-tumorigenic tumor microenvironment by modulating the CD8 + T-cell to Treg ratio. Targeting tumor HK2 expression might be a potential strategy for enhancing anti-tumor immunity.This work was supported by the Basic Research Program through the National Research Foundation of Korea (NRF) funded by the Ministry of Science and ICT (MSIT) (grant No.: 2020R1A4A1017515)

Comprehensive molecular characterization of gastric adenocarcinoma

Gastric cancer is a leading cause of cancer deaths, but analysis of its molecular and clinical characteristics has been complicated by histological and aetiological heterogeneity. Here we describe a comprehensive molecular evaluation of 295 primary gastric adenocarcinomas as part of The Cancer Genome Atlas (TCGA) project. We propose a molecular classification dividing gastric cancer into four subtypes: tumours positive for Epstein–Barr virus, which display recurrent PIK3CA mutations, extreme DNA hypermethylation, and amplification of JAK2, CD274 (also known as PD-L1) and PDCD1LG2 (also knownasPD-L2); microsatellite unstable tumours, which show elevated mutation rates, including mutations of genes encoding targetable oncogenic signalling proteins; genomically stable tumours, which are enriched for the diffuse histological variant and mutations of RHOA or fusions involving RHO-family GTPase-activating proteins; and tumours with chromosomal instability, which show marked aneuploidy and focal amplification of receptor tyrosine kinases. Identification of these subtypes provides a roadmap for patient stratification and trials of targeted therapies

Integrated genomic characterization of oesophageal carcinoma

Oesophageal cancers are prominent worldwide; however, there are few targeted therapies and survival rates for these cancers remain dismal. Here we performed a comprehensive molecular analysis of 164 carcinomas of the oesophagus derived from Western and Eastern populations. Beyond known histopathological and epidemiologic distinctions, molecular features differentiated oesophageal squamous cell carcinomas from oesophageal adenocarcinomas. Oesophageal squamous cell carcinomas resembled squamous carcinomas of other organs more than they did oesophageal adenocarcinomas. Our analyses identified three molecular subclasses of oesophageal squamous cell carcinomas, but none showed evidence for an aetiological role of human papillomavirus. Squamous cell carcinomas showed frequent genomic amplifications of CCND1 and SOX2 and/or TP63, whereas ERBB2, VEGFA and GATA4 and GATA6 were more commonly amplified in adenocarcinomas. Oesophageal adenocarcinomas strongly resembled the chromosomally unstable variant of gastric adenocarcinoma, suggesting that these cancers could be considered a single disease entity. However, some molecular features, including DNA hypermethylation, occurred disproportionally in oesophageal adenocarcinomas. These data provide a framework to facilitate more rational categorization of these tumours and a foundation for new therapies

Digital-Twin Electrochemo-Mechanical Multiphysics Modeling for Lithium Secondary Batteries

Digital twin, Secondary particle, Single particle measurement, Electro-chemo-mechanical model, Structure deformation, Crack propagationⅠ. Introduction 1 1.1 Necessity for particle-level research 1 1.2 Particle Crack formation in High-nickel Active Materials 1 1.3 Particle-Level Analysis Methods: Single Particle Measurement, Scanning Transmission X-ray Microscopy, and 3D Modeling 2 ⅠI. 3D Electrochemical model for a single secondary particle and its application for operando analysis: first generation model 3 2.1 Single particle measurement technique and model geometry 3 2.2 Model equations 5 2.3 Parameter description 7 2.4 Model verification and 1D operando analysis of the LFP particle 10 2.5 2D Operando Analysis in the middle of the LFP particle 12 2.6 3D Operando Analysis and Design of the LFP particle 19 2.7 Discussion 22 ⅠII. DIGITAL-TWIN-DERIVEN ELECTRO-CHEMO-MECHNICAL MULTIPHYSICS MODEL FOR SINGLE PARTICLE CATHODE MATERIALS: SECOND GENERATION MODEL 23 3.1 Single particle measurement technique 23 3.2 3D structure formation of a single NMC711 secondary particle 23 3.2.1 Top-down method: FIB/SEM 23 3.2.2 Bottom-up method: Simulation tool 23 3.3 Mechanical strength measurement of a single particle 26 3.4 Electro-chemo-mechanical multiphysics Model 26 3.4.1 Development of a primitive electrochemical model for a single NMC711 secondary particle 28 3.4.2 Improved electrochemical model with a more realistic 3D-reconstructed digital twin of a single NMC711 particle 31 3.4.3 A digital-twin electro-chemo-mechanical model for simulating lithium-induced strain and stress behavior 35 3.4.4 Particle design: Primary and secondary particle sizes 41 3.5 Discussion 47 Summary (in Korean) 55DoctordCollectio

Towards Higher Rate Electrochemical CO2 Conversion: From Liquid-Phase to Gas-Phase Systems

Electrochemical CO2 conversion offers a promising route for value-added products such as formate, carbon monoxide, and hydrocarbons. As a result of the highly required overpotential for CO2 reduction, researchers have extensively studied the development of catalyst materials in a typical H-type cell, utilizing a dissolved CO2 reactant in the liquid phase. However, the low CO2 solubility in an aqueous solution has critically limited productivity, thereby hindering its practical application. In efforts to realize commercially available CO2 conversion, gas-phase reactor systems have recently attracted considerable attention. Although the achieved performance to date reflects a high feasibility, further development is still required in order for a well-established technology. Accordingly, this review aims to promote the further study of gas-phase systems for CO2 reduction, by generally examining some previous approaches from liquid-phase to gas-phase systems. Finally, we outline major challenges, with significant lessons for practical CO2 conversion systems