erling6232/imagedata: Release 3.0.0rc5

<ul> <li>imagedata.format.niftiplugin: Corrected writing 4D images.</li> <li>Series.show() and Series.get_roi() take an <code>ax</code> argument to show image in existing matplotlib Axes.</li> <li>Series.get_roi() takes an <code>onselect</code> callback function which is called when the ROI is modified.</li> </ul&gt

erling6232/imagedata: Release 3.2.1

Added sphinx_rtd_theme to Sphinx conf.py

erling6232/imagedata: Release 3.0.0rc0

<p>imagedata.formats.niftiplugin improved to handle nifti files like the popular tool dcm2niix.</p&gt

erling6232/imagedata: Release 1.6.0

<p>Series.show() and Series.get_roi() work in Jupyter notebook, too. In notebook: Series.get_roi_mask() must be called after get_roi() to get the actual mask.</p&gt

erling6232/imagedata: Release 1.5.1

<p>Bug fix release:</p> <ul> <li>MyPolygonSelector.<strong>init</strong>(): define self._polygon_complete.</li> <li>Viewer.grid_from_roi(): Set input_order='none' for resulting mask when follow is False.</li> <li>Series.tags: Ensure that tag lists are always Numpy arrays.</li> <li>Series: Handle properly the situation where a template has wrong number of slices or tags.</li> </ul&gt

erling6232/imagedata: Release candidate 3.2.2-rc0

Verify that readthedocs can build documentation

erling6232/imagedata: Release 3.0.0

Stable release 3.0.0 Changed <ul> <li>Modified NIfTI reading/writing. DICOM to NIfTI is now compatible with the popular dcm2niix tool (<a href="https://www.nitrc.org/projects/dcm2nii/">https://www.nitrc.org/projects/dcm2nii/</a>).</li> <li>Notice that NIfTI files written with imagedata prior to version 3 will be incompatible with version 3 onwards.</li> <li>Drop dependency on importlib_metadata.</li> <li>Require numpy version >= 1.20.</li> <li>Require nibabel version >= 5.0.0.</li> <li>Require itk-io version >= 5.3. Previous versions use the np.bool dtype.</li> <li>Drop support for Python 3.6 and 3.7.</li> <li>Series.align(): Resulting image is rounded to nearest integer when the moving image is integer.</li> </ul> Fixed <ul> <li>numpy.bool is deprecated.</li> <li>Series: Fixed a problem where calculated float64 window center and level could not be represented in DICOM DS tag. Window center and level are now calculated using float32.</li> <li>Series: Calculate proper window center and level when a new instance is created.</li> <li>imagedata.formats.dicomplugin: write_slice will change Series into ndarray before rescaling content. This avoids crosstalk with original window center and level in Series.</li> <li>imagedata.formats.niftiplugin: Corrected writing 4D images. When the 4th dimension is not time, the zoom is set to 1.</li> <li>imagedata.formats.niftiplugin: Use sform, not qform, when possible.</li> </ul> Added <ul> <li>Series.show() and Series.get_roi() take an ax argument to show image in existing matplotlib Axes.</li> <li>Series.get_roi() takes an onselect callback function which is called when the ROI is modified.</li> </ul&gt

erling6232/imagedata: Release 3.0.0rc7

<p>Replaced np.bool with bool and/or np.bool_</p&gt

erling6232/imagedata: Release 2.1.2

<p>Added imagedata.apps.diffusion module to get MRI diffusion vectors.</p&gt

erling6232/imagedata: Release 3.2.2

<p>Added sphinx_rtd_theme as requirement.</p&gt