Imaging ontology, contributing to "reasonable" semantics for biomedical repositories

Ontologies are required for precise description of image resources in repositories. The Imaging Ontology describes image acquisition instruments as used in the life sciences and complements ontologies that are used for describing the content. We show how we can reason over optical resolution to assist in experiment planning or knowledge discovery. Use of adjacent classes helps the overall structure of the ontology and its extendibility.Computer Systems, Imagery and Medi

Heterosexual interactions of pairs of laboratory-housed stumptail macaques (Macaca arctoides) under continuous observation with closed-circuit video recording

Female-male interaction of heterosexual pairs of stumptail macaques, housed together continuously, was studied 24 hr per day using closed-circuit video recording. Two pairs were studied for approximately 2 months each. Although no generalizations can be made from such a small sample, no aspect of behavioral interaction varied significantly with the stage of the menstrual cycle of the female partner. Copulation occurred regularly but only during the daylight hours. Both pairs showed several peak ejaculation days (5-21 ejaculations/day), which were distributed throughout the entire menstrual cycle. In general, the highest number of ejaculations was observed to occur when the animals were put together either for the first time or following a separation of a few days. In one pair the female became pregnant, and from the fifth week of pregnancy onward there was a gradual increase in male aggression, coinciding with a decrease in male sexual and grooming behavior. In a second study eight different pairs were observed during the first day together and male copulatory behavior was studied. Two patterns of copulatory behavior could be discerned: pairs displaying a high number of ejaculations (19-38) and pairs displaying a low number of ejaculations (4-8). With regard to the interejaculatory interval (IEI), the male stumptail appeared to be unique. In contrast to what has been reported for other mammals, i.e., a steady increase in IEI with subsequent ejaculations, the stumptail showed increasing IEIs only during the first three to four, as well as between the last, ejaculations; in between, the IEI remained relatively constant. The maximum number of consecutive ejaculations observed was 38, displayed during a 10-hr time period (mean (± SEM)IEI, 12.9 ± 3.5 min)

Observations on semantic annotation of micrscope images for life sciences

Computer Systems, Imagery and Medi

Extragalactic Peaked-Spectrum Radio Sources at Low-Frequencies are Young Radio Galaxies

© 2022 Dementia and Geriatric Cognitive Disorders. All rights reserved. This is an Open Access article, published by EDP Sciences, under the terms of the Creative Commons Attribution License (https://creativecommons.org/licenses/by/4.0).We present a sample of 373 peaked-spectrum (PS) sources with spectral peaks around 150 MHz, selected using a subset of the two LOw Frequency ARray (LOFAR) all-sky surveys, the LOFAR Two Meter Sky Survey and the LOFAR LBA Sky Survey. These LOFAR surveys are the most sensitive low-frequency widefield surveys to date, allowing us to select low-luminosity peaked-spectrum sources. Our sample increases the number of known PS sources in our survey area by a factor 50. The 5 GHz luminosity distribution of our PS sample shows we sample the lowest luminosity PS sources to date by nearly an order of magnitude. Since high-frequency gigahertz-peaked spectrum sources and compact steep-spectrum sources are hypothesised to be the precursors to large radio galaxies, we investigate whether this is also the case for our sample of low-frequency PS sources. Using optical line emission criteria, we find that our PS sources are predominately high-excitation radio galaxies instead of low-excitation radio galaxies, corresponding to a quickly evolving population. We compute the radio source counts of our PS sample, and find they are scaled down by a factor of ≈40 compared to a general sample of radio-loud active galactic nuclei (AGN). This implies that the lifetimes of PS sources are 40 times shorter than large-scale radio galaxies if their luminosity functions are identical. To investigate this, we compute the first radio luminosity function for a homogeneously selected PS sample. We find that for 144 MHz luminosities ≳1025 W Hz-1, the PS luminosity function has the same shape as an unresolved radio-loud AGN population, but shifted down by a factor of ≈-pagination10. We interpret this as strong evidence that these high-luminosity PS sources evolve into large-scale radio-loud AGN. For local low-luminosity PS sources, there is a surplus of PS sources, which we hypothesise to be the addition of frustrated PS sources that do not evolve into large-scale AGN.Peer reviewe

A semantic-based metadata validation for an automated High-Throughput Screening workflow: case study in CytomicsDB

Computer Systems, Imagery and Medi