Incorporating spatial correlations into multispecies mean-field models

In biology, we frequently observe different species existing within the same environment. For example, there are many cell types in a tumour, or different animal species may occupy a given habitat. In modeling interactions between such species, we often make use of the mean-field approximation, whereby spatial correlations between the locations of individuals are neglected. Whilst this approximation holds in certain situations, this is not always the case, and care must be taken to ensure the mean-field approximation is only used in appropriate settings. In circumstances where the mean-field approximation is unsuitable, we need to include information on the spatial distributions of individuals, which is not a simple task. In this paper, we provide a method that overcomes many of the failures of the mean-field approximation for an on-lattice volume-excluding birth-death-movement process with multiple species. We explicitly take into account spatial information on the distribution of individuals by including partial differential equation descriptions of lattice site occupancy correlations. We demonstrate how to derive these equations for the multispecies case and show results specific to a two-species problem. We compare averaged discrete results to both the mean-field approximation and our improved method, which incorporates spatial correlations. We note that the mean-field approximation fails dramatically in some cases, predicting very different behavior from that seen upon averaging multiple realizations of the discrete system. In contrast, our improved method provides excellent agreement with the averaged discrete behavior in all cases, thus providing a more reliable modeling framework. Furthermore, our method is tractable as the resulting partial differential equations can be solved efficiently using standard numerical techniques

Spectral matching for abundances of 848 stars of the giant branches of the globular cluster {\omega} Centauri

We present the effective temperatures, surface gravities and abundances of iron, carbon and barium of 848 giant branch stars, of which 557 also have well-defined nitrogen abundances, of the globular cluster {\omega} Centauri. This work used photometric sources and lower resolution spectra for this abundance analysis. Spectral indices were used to estimate the oxygen abundance of the stars, leading to a determination of whether a particular star was oxygen-rich or oxygen-poor. The 557-star subset was analyzed in the context of evolutionary groups, with four broad groups identified. These groups suggest that there were at least four main four periods of star formation in the cluster. The exact order of these star formation events is not yet understood. These results compare well with those found at higher resolution and show the value of more extensive lower resolution spectral surveys. They also highlight the need for large samples of stars when working with a complex object like {\omega} Cen.Comment: 12 pages, 14 figures, accepted for publication in MNRA

One-dimensional transport of bosons between weakly linked reservoirs

We study a flow of ultracold bosonic atoms through a one-dimensional channel that connects two macroscopic three-dimensional reservoirs of Bose-condensed atoms via weak links implemented as potential barriers between each of the reservoirs and the channel. We consider reservoirs at equal chemical potentials so that a superflow of the quasicondensate through the channel is driven purely by a phase difference 2Φ imprinted between the reservoirs. We find that the superflow never has the standard Josephson form ∼ sin 2Φ. Instead, the superflow discontinuously flips direction at 2Φ ¼ _π and has metastable branches.We show that these features are robust and not smeared by fluctuations or phase slips. We describe a possible experimental setup for observing these phenomen

Shrinking Point Bifurcations of Resonance Tongues for Piecewise-Smooth, Continuous Maps

Resonance tongues are mode-locking regions of parameter space in which stable periodic solutions occur; they commonly occur, for example, near Neimark-Sacker bifurcations. For piecewise-smooth, continuous maps these tongues typically have a distinctive lens-chain (or sausage) shape in two-parameter bifurcation diagrams. We give a symbolic description of a class of "rotational" periodic solutions that display lens-chain structures for a general $N$-dimensional map. We then unfold the codimension-two, shrinking point bifurcation, where the tongues have zero width. A number of codimension-one bifurcation curves emanate from shrinking points and we determine those that form tongue boundaries.Comment: 27 pages, 6 figure

Ill-posedness of degenerate dispersive equations

In this article we provide numerical and analytical evidence that some degenerate dispersive partial differential equations are ill-posed. Specifically we study the K(2,2) equation $u_t = (u^2)_{xxx} + (u^2)_{x}$ and the "degenerate Airy" equation $u_t = 2 u u_{xxx}$. For K(2,2) our results are computational in nature: we conduct a series of numerical simulations which demonstrate that data which is very small in $H^2$ can be of unit size at a fixed time which is independent of the data's size. For the degenerate Airy equation, our results are fully rigorous: we prove the existence of a compactly supported self-similar solution which, when combined with certain scaling invariances, implies ill-posedness (also in $H^2$)

Unstable dimension variability, heterodimensional cycles, and blenders in the border-collision normal form

Chaotic attractors commonly contain periodic solutions with unstable manifolds of different dimensions. This allows for a zoo of dynamical phenomena not possible for hyperbolic attractors. The purpose of this Letter is to demonstrate these phenomena in the border-collision normal form. This is a continuous, piecewise-linear family of maps that is physically relevant as it captures the dynamics created in border-collision bifurcations in diverse applications. Since the maps are piecewise-linear they are relatively amenable to an exact analysis and we are able to explicitly identify parameter values for heterodimensional cycles and blenders. For a one-parameter subfamily we identify bifurcations involved in a transition through unstable dimension variability. This is facilitated by being able to compute periodic solutions quickly and accurately, and the piecewise-linear form should provide a useful test-bed for further study

Electrical conduction of silicon oxide containing silicon quantum dots

Current-voltage measurements have been made at room temperature on a Si-rich silicon oxide film deposited via Electron-Cyclotron Resonance Plasma Enhanced Chemical Vapor Deposition (ECR-PECVD) and annealed at 750 - 1000$^\circ$C. The thickness of oxide between Si quantum dots embedded in the film increases with the increase of annealing temperature. This leads to the decrease of current density as the annealing temperature is increased. Assuming the Fowler-Nordheim tunneling mechanism in large electric fields, we obtain an effective barrier height $\phi_{eff}$ of $\sim$ 0.7 $\pm$ 0.1 eV for an electron tunnelling through an oxide layer between Si quantum dots. The Frenkel-Poole effect can also be used to adequately explain the electrical conduction of the film under the influence of large electric fields. We suggest that at room temperature Si quantum dots can be regarded as traps that capture and emit electrons by means of tunneling.Comment: 14 pages, 5 figures, submitted to J. Phys. Conden. Mat