Bootstrapping the sample quantile based on weakly dependent observations

In this work, we investigate consistency properties of normal approximation and block bootstrap approximations for sample quantiles of weakly dependent data. Under mild weak dependence conditions and mild smoothness conditions on the one-dimensional marginal distribution function, we show that the moving block bootstrap (MBB) method provides a valid approximation to the distribution of normalized sample quantile and the corresponding MBB estimator of the asymptotic variance is also strongly consistent. Along the line, we also examine the rate of convergence of the MBB approximation to the distribution of the sample quantile, and prove a Berry-Esseen Theorem, which indicates that the normal approximation to the distribution of the sample quantile under weak dependence is of order O(n-1/2)

Compound Danshen dripping pills prevent early diabetic retinopathy: roles of vascular protection and neuroprotection

Introduction: Diabetic retinopathy (DR) represents a major cause of adult blindness, and early discovery has led to significant increase in the number of patients with DR. The drugs currently used for treatment, such as ranibizumab, mainly focus on the middle and late periods of DR, and thus do not meet the clinical need. Here, the potential mechanisms by which compound Danshen Dripping Pills (CDDP) might protect against early DR were investigated.Methods: Db/db mice were used to establish a DR model. The initial weights and HbA1c levels of the mice were monitored, and retinal pathology was assessed by hematoxylin-eosin (HE) staining. The vascular permeability of the retina and thickness of each retinal layer were measured, and electroretinogram were performed together with fundus fluorescein angiography and optical coherence tomography. The levels of inflammatory factors were examined in retinal tissue, as well as those of intercellular adhesion molecule 1 (ICAM-1), IL-6, and monocyte chemoattractant protein 1 (MCP-1) in the serum using ELISA. Immunohistochemistry was used to evaluate levels of vascular endothelial growth factor (VEGF), B-cell lymphoma 2 (Bcl-2), and Bclassociated X protein (Bax). Retinal cell injury and apoptosis were examined by TdT-mediated dUTP Nick End Labeling (TUNEL) assays.Results: The data showed that CDDP significantly improved cellular disarrangement. Imaging data indicated that CDDP could reduce vascular permeability and the amplitude of oscillatory potentials (OPs), and restore the thickness of the ganglion cell layer. Moreover, CDDP reduced the expression levels of inflammatory factors in both the retina and serum.Conclusion: These findings strongly suggest that CDDP prevents early DR through vascular and neuroprotection

Exosomes in pathogenesis, diagnosis, and therapy of ischemic stroke

Ischemic stroke is one of the major contributors to death and disability worldwide. Thus, there is an urgent need to develop early brain tissue perfusion therapies following acute stroke and to enhance functional recovery in stroke survivors. The morbidity, therapy, and recovery processes are highly orchestrated interactions involving the brain with other tissues. Exosomes are natural and ideal mediators of intercellular information transfer and recognized as biomarkers for disease diagnosis and prognosis. Changes in exosome contents express throughout the physiological process. Accumulating evidence demonstrates the use of exosomes in exploring unknown cellular and molecular mechanisms of intercellular communication and organ homeostasis and indicates their potential role in ischemic stroke. Inspired by the unique properties of exosomes, this review focuses on the communication, diagnosis, and therapeutic role of various derived exosomes, and their development and challenges for the treatment of cerebral ischemic stroke

Inferring the Individual Psychopathologic Deficits With Structural Connectivity in a Longitudinal Cohort of Schizophrenia.

The prediction of schizophrenia-related psychopathologic deficits is exceedingly important in the fields of psychiatry and clinical practice. However, objective association of the brain structure alterations to the illness clinical symptoms is challenging. Although, schizophrenia has been characterized as a brain dysconnectivity syndrome, evidence accounting for neuroanatomical network alterations remain scarce. Moreover, the absence of generalized connectome biomarkers for the assessment of illness progression further perplexes the prediction of long-term symptom severity. In this paper, a combination of individualized prediction models with quantitative graph theoretical analysis was adopted, providing a comprehensive appreciation of the extent to which the brain network properties are affected over time in schizophrenia. Specifically, Connectome-based Prediction Models were employed on Structural Connectivity (SC) features, efficiently capturing individual network-related differences, while identifying the anatomical connectivity disturbances contributing to the prediction of psychopathological deficits. Our results demonstrated distinctions among widespread cortical circuits responsible for different domains of symptoms, indicating the complex neural mechanisms underlying schizophrenia. Furthermore, the generated models were able to significantly predict changes of symptoms using SC features at follow-up, while the preserved SC features suggested an association with improved positive and overall symptoms. Moreover, cross-sectional significant deficits were observed in network efficiency and a progressive aberration of global integration in patients compared to healthy controls, representing a group-consensus pathological map, while supporting the dysconnectivity hypothesis

Changing effects of energy and water on the richness distribution pattern of the Quercus genus in China

Climate varies along geographic gradients, causing spatial variations in the effects of energy and water on species richness and the explanatory power of different climatic factors. Species of the Quercus genus are important tree species in China with high ecological and socioeconomic value. To detect whether the effects of energy and water on species richness change along climatic gradients, this study built geographically weighted regression models based on species richness and climatic data. Variation partition analysis and hierarchical partitioning analysis were used to further explore the main climatic factors shaping the richness distribution pattern of Quercus in China. The results showed that Quercus species were mainly distributed in mountainous areas of southwestern China. Both energy and water were associated with species richness, with global slopes of 0.17 and 0.14, respectively. The effects of energy and water on species richness gradually increased as energy and water in the environment decreased. The interaction between energy and water altered the effect of energy, and in arid regions, the effects of energy and water were relatively stronger. Moreover, energy explained more variation in species richness in both the entire study area (11.5%) and different climate regions (up to 19.4%). The min temperature of coldest month was the main climatic variable forming the richness distribution pattern of Quercus in China. In conclusion, cold and drought are the critical climatic factors limiting the species richness of Quercus, and climate warming will have a greater impact in arid regions. These findings are important for understanding the biogeographic characteristics of Quercus and conserving biodiversity in China

Optimum wool harvest interval of angora rabbits under organised farm conditions in East China

[EN] The present study was conducted to evaluate the commercial lifespan and optimum wool harvest interval of Angora rabbits. One hundred shorn Angora rabbits were housed in an organised farm to describe the wool production curve. It showed that the optimum wool harvest interval was 75 d, when fibre length reached 55.0 mm. Wool production was lower from the 3rd to the 6th mo (young stage) than from 7th to 28th mo and rapidly decreased from 28th to 31st mo and was the lowest from 31st to 33rd mo of age. Feed intake-to-wool production ratio was higher from 3rd to 4th and from 7th to 9th mo of age than during the adult stage, and increased from 31st to 33rd mo of age. Daily weight gain was significantly higher from 3rd to 4th mo of age than in any other periods of the adult stage, and was negative from 23rd to 33rd mo of age. Therefore, the study reveals that the commercial lifespan of Angora rabbits was approximately 28 mo. Furthermore, wool production was higher in spring and winter than in autumn, and was the lowest in summer. Concomitantly, feed intake-to-wool production ratio was lower in spring than in autumn and winter, and was the highest in summer. Finally, daily weight gain was higher in spring and autumn than in winter, and was the lowest in summer. This indicates that wool production was depending on the season, and decreased significantly in summer. Moreover, the spring provided the best conditions for Angora rabbits.This study was partially funded by the Youth Fund of Shandong Academy of Agricultural Sciences (2014QNM42), and the National Natural Science Foundation of China (No. 31501927; No. 31501928). We would like to thank Elixigen (www.elixigen.com) for English language editing.Bai, L.; Jiang, W.; Wang, W.; Gao, S.; Sun, H.; Yang, L.; Hu, H. (2019). Optimum wool harvest interval of angora rabbits under organised farm conditions in East China. 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Differences in Sensory Characteristics and Aroma Compounds between Young and Aged Qingxiangxing Baijiu

The characteristic aroma compounds of qingxiangxing baijiu were analyzed and the differences in sensory characteristics and aroma compounds between young and aged baijiu were clarified by sensory evaluation and techniques for qualitative and quantitative analysis of aroma compounds. Totally 69 odor-active compounds with flavor dilution (FD) factor ≥ 2 were confirmed by comparative aroma extract dilution analysis (CAEDA). A total of 40 odor-active compounds in young qingxiangxing baijiu and 43 in aged qingxiangxing baijiu were identified based on odor activity value (OAV). The important aroma compounds of young and aged baijiu were verified by aroma recombination experiments. Finally, heatmap analysis showed that the differential important aroma compounds (P ≤ 0.05) between young and aged qingxiangxing baijiu mainly included γ-butyrolactone, ethyl isovalerate, γ-nonanolactone, ethyl isobutyrate, 3-methylbutanoic acid, 1,1-diethoxyethane, β-phenylethanol, 2-pentyl furan, acetaldehyde, butanoic acid, ethyl hexanoate, benzaldehyde, furfural, vanillin, hexanal, 3-hydroxy-2-butanone, and 2,3-butanedione. In summary, microconstituents were more abundant in aged than young baijiu, and so were most esters, organic acids, aldehydes, and ketones, while the opposite was found for propanol, isobutanol, and 3-methylbutanol. These could be the major reasons for the significant differences in the sensory characteristics of young and aged baijiu

Complete genome sequence of Shigella flexneri 5b and comparison with Shigella flexneri 2a

BACKGROUND: Shigella bacteria cause dysentery, which remains a significant threat to public health. Shigella flexneri is the most common species in both developing and developed countries. Five Shigella genomes have been sequenced, revealing dynamic and diverse features. To investigate the intra-species diversity of S. flexneri genomes further, we have sequenced the complete genome of S. flexneri 5b strain 8401 (abbreviated Sf8401) and compared it with S. flexneri 2a (Sf301). RESULTS: The Sf8401 chromosome is 4.5-Mb in size, a little smaller than that of Sf301, mainly because the former lacks the SHI-1 pathogenicity island (PAI). Compared with Sf301, there are 6 inversions and one translocation in Sf8401, which are probably mediated by insertion sequences (IS). There are clear differences in the known PAIs between these two genomes. The bacteriophage SfV segment remaining in SHI-O of Sf8401 is clearly larger than the remnants of bacteriophage SfII in Sf301. SHI-1 is absent from Sf8401 but a specific related protein is found next to the pheV locus. SHI-2 is involved in one intra-replichore inversion near the origin of replication, which may change the expression of iut/iuc genes. Moreover, genes related to the glycine-betaine biosynthesis pathway are present only in Sf8401 among the known Shigella genomes. CONCLUSION: Our data show that the two S. flexneri genomes are very similar, which suggests a high level of structural and functional conservation between the two serotypes. The differences reflect different selection pressures during evolution. The ancestor of S. flexneri probably acquired SHI-1 and SHI-2 before SHI-O was integrated and the serotypes diverged. SHI-1 was subsequently deleted from the S. flexneri 5b genome by recombination, but stabilized in the S. flexneri 2a genome. These events may have contributed to the differences in pathogenicity and epidemicity between the two serotypes of S. flexneri

Rice‐animal co‐culture systems benefit global sustainable intensification

Producing more food with less pollution and greenhouse gas emissions is a grand challenge for the 21st century. Strategies to successfully promote win-win outcomes for both food security and environmental health are not easy to identify. Here we comprehensively assess an ecological rice-animal co-culture system (RAC) (e.g., rice-fish, rice-duck, and rice-crayfish) through a global meta-analysis and identify the potential benefits of global promotion. Compared to traditional monoculture of rice or animal production, the RAC can not only reduce the demand for agricultural land areas, but also increase rice yields (+4%) as well as nitrogen use efficiency of rice (+6%). At the same time, RAC reduces nitrogen losses (−16% runoff and −13% leaching) and methane emissions (−11%), except for rice-fish coculture systems, which are likely to increase methane emissions (+29%). Furthermore, RAC increases the net income of farmers through reducing cost of fertilizer and pesticide input and achieving higher outputs with more marketable products. According to the development stage of different countries, promotion of RAC will thus realize multiple benefits and aid sustainable intensification