Control strategies for late blight in organic potato production

This report was presented at the UK Organic Research 2002 Conference. Protective copper fungicides are currently used to control late blight in most organic production systems, but approval for their use in organic farming will be revoked in 2002. Evidence suggests that organic potato production will not be reliably economic in the absence of Cu. Current controls for late blight are reviewed including: variety selection/breeding for blight resistance, diversification strategies, agronomic strategies for the management of late blight, and alternative treatments to Cu-fungicides

The effect of organic and conventional management on the yield and quality of wheat grown in a long-term field trial

The performance of winter wheat was evaluated under organic (ORG) and conventional (CON) management systems in the Nafferton Factorial Systems Comparison (NFSC) long-term field trial. The present study separates out the crop protection and fertility management components of organic and conventional production systems using two levels each of crop protection (CP) and fertility management (FM). The experimental design provided the four combinations of crop protection and fertility (CON-CP CONFM, CON-CP ORG-FM, ORG-CP CON-FM and ORG-CP ORG-FM) to evaluate their effects on yield, quality (protein content and hectolitre weight) and disease levels during the period 2004–2008. The conventional management system (CON-CP CON-FM) out-yielded the organic management system (ORG-CP ORG-FM) in all years by an average of 3.1 t ha−1, i.e. 7.9 t ha−1 vs. 4.8 t ha−1. Fertility management was the key factor identified limiting both yield and grain protein content in the ORG management system. The CON-FM produced on average a 3% higher protein content than ORG-FM in all years (12.5% vs. 9.7%). However the ORG-CP system produced higher protein levels than CON-CP although it was only in 2008 that this was statistically significant. In contrast to protein content it was ORG-FM which produced a higher hectolitre weight than the CON-FM system (71.6 kg hl−1 vs. 71.0 kg hl−1). The clear and significant differences in yield and protein content between the ORG-FM and CON-FM systems suggest a limited supply of available N in the organic fertility management system which is also supported by the significant interaction effect of the preceding crop on protein content. The pRDA showed that although fertilisation had the greatest effect on yield, quality and disease there was also a considerable effect of crop protection and the environment

The influence of organic and conventional fertilisation and crop protection practices, preceding crop, harvest year and weather conditions on yield and quality of potato (Solanum tuberosum) in a long-term management trial

The effects of organic versus conventional crop management practices (fertilisation, crop protection) and preceding crop on potato tuber yield (total, marketable, tuber size grade distribution) and quality (proportion of diseased, green and damaged tubers, tuber macro-nutrient concentrations) parameters were investigated over six years (2004–2009) as part of a long-term factorial field trial in North East England. Inter-year variability (the effects of weather and preceding crop) was observed to have a profound effect on yields and quality parameters, and this variability was greater in organic fertility systems. Total and marketable yields were significantly reduced by the use of both organic crop protection and fertility management. However, the yield gap between organic and conventional fertilisation regimes was greater and more variable than that between crop protection practices. This appears to be attributable mainly to lower and less predictable nitrogen supply in organically fertilised crops. Increased incidence of late blight in organic crop protection systems only occurred when conventional fertilisation was applied. In organically fertilised crops yield was significantly higher following grass/red clover leys than winter wheat, but there was no pre-crop effect in conventionally fertilised crops. The results highlight that nitrogen supply from organic fertilisers rather than inefficient pest and disease control may be the major limiting factor for yields in organic potato production systems

Causality and the semantics of provenance

Provenance, or information about the sources, derivation, custody or history of data, has been studied recently in a number of contexts, including databases, scientific workflows and the Semantic Web. Many provenance mechanisms have been developed, motivated by informal notions such as influence, dependence, explanation and causality. However, there has been little study of whether these mechanisms formally satisfy appropriate policies or even how to formalize relevant motivating concepts such as causality. We contend that mathematical models of these concepts are needed to justify and compare provenance techniques. In this paper we review a theory of causality based on structural models that has been developed in artificial intelligence, and describe work in progress on a causal semantics for provenance graphs.Comment: Workshop submissio

Northern grazing carbon farming – integrating production and greenhouse gas outcomes 1 : Climate Clever Beef Final Report

This project targeted three large and diverse regions across northern Australia: the Queensland Gulf, the Queensland Fitzroy Basin and the Northern Territory (Victoria River District, Douglas Daly and Barkly Tableland regions). Eleven grazing businesses across three broad regions were engaged as case studies to undertake demonstrations and evaluations within their businesses. These businesses manage more than 1,281,000 ha and 97,600 cattle. The project provided an excellent opportunity to capitalize on established networks and genuine producer interest and participation built up in recent initiatives (e.g. CCRP Climate Clever Beef (Bray et al. 2014), Northern Grazing Systems project (Phelps et al. 2014), RELRP, SCaRP, SavannaPlan, CQ Beef). The project team included research and extension professionals with decades of combined experience working with northern beef producers. The knowledge and analytical tools developed during previous projects identified practices to: reduce the greenhouse gas emissions impact of beef businesses, manage climate variability, improve land condition and increase business profitability

Northern grazing carbon farming – integrating production and greenhouse gas outcomes 1 : Climate Clever Beef Final Report

This project targeted three large and diverse regions across northern Australia: the Queensland Gulf, the Queensland Fitzroy Basin and the Northern Territory (Victoria River District, Douglas Daly and Barkly Tableland regions). Eleven grazing businesses across three broad regions were engaged as case studies to undertake demonstrations and evaluations within their businesses. These businesses manage more than 1,281,000 ha and 97,600 cattle. The project provided an excellent opportunity to capitalize on established networks and genuine producer interest and participation built up in recent initiatives (e.g. CCRP Climate Clever Beef (Bray et al. 2014), Northern Grazing Systems project (Phelps et al. 2014), RELRP, SCaRP, SavannaPlan, CQ Beef). The project team included research and extension professionals with decades of combined experience working with northern beef producers. The knowledge and analytical tools developed during previous projects identified practices to: reduce the greenhouse gas emissions impact of beef businesses, manage climate variability, improve land condition and increase business profitability

Improving Crop Health, Performance, and Quality in Organic Spring Wheat Production: The Need to Understand Interactions between Pedoclimatic Conditions, Variety, and Fertilization

Organic wheat production systems have lower yields compared with intensive conventional production and often do not achieve the grain protein content and quality thresholds set by millers and bakers. In contrast, organic production methods were reported to result in higher concentrations of nutritionally desirable micronutrients and lower concentrations of the toxic metal Cd in wheat grain and wholegrain flour. However, although N-availability and variety characteristics are known to affect both gain yields and bread-making quality, the exact reasons for the yield gap and differences in grain processing and nutritional quality between organic and conventional spring wheat production in the UK are poorly understood. The overall aim of this study was therefore to determine to what extent changes in variety choice and fertilization regimes may reduce the yield gap and improve processing quality without affecting nutritional quality in organic spring wheat production. To achieve this aim, we compared crop health, yield, grain processing, and nutritional quality parameters in spring wheat produced using (i) six contrasting spring wheat varieties grown with a standard fertilization regime and (ii) one variety widely used by organic farmers (Paragon) with nine different fertilization regimes in (iii) three UK sites/farms with contrasting pedoclimatic conditions. Significant differences in foliar disease severity, grain yield, and quality parameters were detected between six contrasting spring wheat varieties when grown under organic management regimes. Specifically, the varieties Paragon and Tybalt were identified as the best-performing varieties with respect to foliar disease resistance and grain yield under organic farming conditions and also produced high processing and nutritional quality across the three UK sites. However, the highest grain yields were obtained by Paragon at the Gilchester site and Tybalt at the Sheepdrove and Courtyard sites, while the highest protein contents were produced by Tybalt at the Gilchester site and Paragon at the Sheepdrove and Courtyard sites, which suggests that there is a need for site-specific wheat variety selection in the UK organic sector. Although organic fertilizer input type and level also affected wheat performance, differences between fertilization regimes were smaller than those observed between the five contrasting varieties, which suggests that improvements in spring wheat breeding/selection have a greater potential for increasing crop yield and quality in the organic sector compared with changes to fertilization practices. Overall, results suggest it is feasible to breed/select spring wheat varieties that combine high protein, vitamin E, and micronutrients with low toxic metal (Cd, Pb) concentrations when produced under organic farming conditions. These findings also support the hypothesis that differences in variety choice by organic and conventional farmers have contributed to the differences in nutritional quality between organic and conventional wheat products reported in previous studies

Meeting Report from the Second 'Minimum Information for Biological and Biomedical Investigations (MIBBI) workshop

Face-to-face meetings play a central role in the birth and maturation of communities. Intensive workshops filled with presentations, discussions and working group meetings have always been at the heart of the activities of the Genomic Standards Consortium (GSC). Such work-driven meetings are a key way in which the GSC fulfils its mission. Similarly, meeting reports provide a key mechanism for preserving and disseminating the consensus built at such meetings as they describe the range of speakers and participants present, topics covered and key outcomes and priorities agreed upon by the community.This issue contains a total of nine meeting reports, from workshops held between April and October 2010 that are presented to the reader to provide a broad overview of ongoing GSC activities and initiatives

Mortality Among Adults With Cancer Undergoing Chemotherapy or Immunotherapy and Infected With COVID-19

Importance: Large cohorts of patients with active cancers and COVID-19 infection are needed to provide evidence of the association of recent cancer treatment and cancer type with COVID-19 mortality. // Objective: To evaluate whether systemic anticancer treatments (SACTs), tumor subtypes, patient demographic characteristics (age and sex), and comorbidities are associated with COVID-19 mortality. // Design, Setting, and Participants: The UK Coronavirus Cancer Monitoring Project (UKCCMP) is a prospective cohort study conducted at 69 UK cancer hospitals among adult patients (≥18 years) with an active cancer and a clinical diagnosis of COVID-19. Patients registered from March 18 to August 1, 2020, were included in this analysis. // Exposures: SACT, tumor subtype, patient demographic characteristics (eg, age, sex, body mass index, race and ethnicity, smoking history), and comorbidities were investigated. // Main Outcomes and Measures: The primary end point was all-cause mortality within the primary hospitalization. // Results: Overall, 2515 of 2786 patients registered during the study period were included; 1464 (58%) were men; and the median (IQR) age was 72 (62-80) years. The mortality rate was 38% (966 patients). The data suggest an association between higher mortality in patients with hematological malignant neoplasms irrespective of recent SACT, particularly in those with acute leukemias or myelodysplastic syndrome (OR, 2.16; 95% CI, 1.30-3.60) and myeloma or plasmacytoma (OR, 1.53; 95% CI, 1.04-2.26). Lung cancer was also significantly associated with higher COVID-19–related mortality (OR, 1.58; 95% CI, 1.11-2.25). No association between higher mortality and receiving chemotherapy in the 4 weeks before COVID-19 diagnosis was observed after correcting for the crucial confounders of age, sex, and comorbidities. An association between lower mortality and receiving immunotherapy in the 4 weeks before COVID-19 diagnosis was observed (immunotherapy vs no cancer therapy: OR, 0.52; 95% CI, 0.31-0.86). // Conclusions and Relevance: The findings of this study of patients with active cancer suggest that recent SACT is not associated with inferior outcomes from COVID-19 infection. This has relevance for the care of patients with cancer requiring treatment, particularly in countries experiencing an increase in COVID-19 case numbers. Important differences in outcomes among patients with hematological and lung cancers were observed