Additional file 1: of Phylogeography of social polymorphism in a boreo-montane ant

Additional materials and methods. (DOC 44 kb

Additional file 6: Figure S4. of Discrete phenotypes are not underpinned by genome-wide genetic differentiation in the squat lobster Munida gregaria (Crustacea: Decapoda: Munididae): a multi-marker study covering the Patagonian shelf

Correlation between genetic distances (Pairwise F ST values for COI and pairwise (δμ)2 values for microsatellites) and log-transformed geographical distances for mitochondrial and microsatellite data for specimens from 25 sampling sites listed in Table 1. (EPS 1500 kb

Additional file 3: Table S2. of Discrete phenotypes are not underpinned by genome-wide genetic differentiation in the squat lobster Munida gregaria (Crustacea: Decapoda: Munididae): a multi-marker study covering the Patagonian shelf

Diversity indices of nine microsatellite loci for the two ecotypes. Reported are number of alleles nA, fragment size range, observed heterozygosity H O , expected heterozygosity H E and allelic richness Ar. Significant deviation from Hardy-Weinberg equilibruim (P < 0.05, based on 10,000 permutations) after Bonferroni correction were labeled in bold. (DOCX 19 kb

Additional file 5: Figure S3. of Discrete phenotypes are not underpinned by genome-wide genetic differentiation in the squat lobster Munida gregaria (Crustacea: Decapoda: Munididae): a multi-marker study covering the Patagonian shelf

Tests of statistical power for microsatellite data set as inferred with POWSIM 4.1. (EPS 1184 kb

Additional file 4: Figure S2. of Discrete phenotypes are not underpinned by genome-wide genetic differentiation in the squat lobster Munida gregaria (Crustacea: Decapoda: Munididae): a multi-marker study covering the Patagonian shelf

Allelic frequencies (in logarithm) of the nine microsatellite loci polymorphism. (EPS 1291 kb

Additional file 1: Table S1. of Discrete phenotypes are not underpinned by genome-wide genetic differentiation in the squat lobster Munida gregaria (Crustacea: Decapoda: Munididae): a multi-marker study covering the Patagonian shelf

Genetic diversity of COI sequences per ecotype. (DOCX 15 kb

Statistical parsimony haplotype networks based on the 16S rDNA sequences of <i>Eurythenes gryllus</i>.

<p>The dataset includes sequences from this study, that of France and Kocher <a href="http://www.plosone.org/article/info:doi/10.1371/journal.pone.0074218#pone.0074218-France2" target="_blank">[12]</a> and Escobar-Briones <i>et al. </i><a href="http://www.plosone.org/article/info:doi/10.1371/journal.pone.0074218#pone.0074218-EscobarBriones1" target="_blank">[36]</a>. The area of each circle is proportional to the frequency of the haplotype in our sampling (a scale is presented). Each line represents a single substitution, nodes represent hypothetical haplotypes and colors refer to the sampling localities. Haplotype networks (95% probability threshold) are numbered (Eg1–9) according to the different clusters identified in <a href="http://www.plosone.org/article/info:doi/10.1371/journal.pone.0074218#pone-0074218-g002" target="_blank">Figures 2</a>–<a href="http://www.plosone.org/article/info:doi/10.1371/journal.pone.0074218#pone-0074218-g003" target="_blank">3</a>.</p

Bayesian tree inferred for the 16S rDNA dataset of <i>Eurythenes gryllus</i>.

<p>Posterior probabilities (>0.5) are shown at each node. In the case of identical sequences, all specimens are listed with corresponding abbreviations. For the sequences retrieved from GenBank <a href="http://www.plosone.org/article/info:doi/10.1371/journal.pone.0074218#pone.0074218-France2" target="_blank">[12]</a>, <a href="http://www.plosone.org/article/info:doi/10.1371/journal.pone.0074218#pone.0074218-EscobarBriones1" target="_blank">[36]</a>, the accession number of the haplotype as well as the number of specimens per haplotype is indicated (when higher than 1). The different clusters are assigned with the codes Eg1–9. For each cluster, distributional ranges (ocean basin, bathyal vs. abyssal, depth) are indicated.</p

Range and mean of pairwise K2P intraclade and interclade distances for COI, 28S rDNA and 16S rDNA for each clade identified within <i>Eurythenes gryllus</i> (sequence data from this study, France and Kocher [12], Escobar-Briones <i>et al.</i>[36]).

<p>Range and mean of pairwise K2P intraclade and interclade distances for COI, 28S rDNA and 16S rDNA for each clade identified within <i>Eurythenes gryllus</i> (sequence data from this study, France and Kocher <a href="http://www.plosone.org/article/info:doi/10.1371/journal.pone.0074218#pone.0074218-France2" target="_blank">[12]</a>, Escobar-Briones <i>et al.</i><a href="http://www.plosone.org/article/info:doi/10.1371/journal.pone.0074218#pone.0074218-EscobarBriones1" target="_blank">[36]</a>).</p

Sample localities of <i>Eurythenes gryllus sensu lato</i>.

<p>Abbreviations refer to samples from this study, that of France and Kocher <a href="http://www.plosone.org/article/info:doi/10.1371/journal.pone.0074218#pone.0074218-France2" target="_blank">[12]</a> and Escobar-Briones <i>et al. </i><a href="http://www.plosone.org/article/info:doi/10.1371/journal.pone.0074218#pone.0074218-EscobarBriones1" target="_blank">[36]</a> (for details see <a href="http://www.plosone.org/article/info:doi/10.1371/journal.pone.0074218#pone-0074218-t001" target="_blank">Table 1</a>). The sampling region in the Southern Ocean is shown as an enlargement. Color codes are provided for each sampling locality and are used consistently in the other figures.</p