Impaired Replication Stress Response in Cells from Immunodeficiency Patients Carrying Cernunnos/XLF Mutations

Non-Homologous End Joining (NHEJ) is one of the two major pathways of DNA Double Strand Breaks (DSBs) repair. Mutations in human NHEJ genes can lead to immunodeficiency due to its role in V(D)J recombination in the immune system. In addition, most patients carrying mutations in NHEJ genes display developmental anomalies which are likely the result of a general defect in repair of endogenously induced DSBs such as those arising during normal DNA replication. Cernunnos/XLF is a recently identified NHEJ gene which is mutated in immunodeficiency with microcephaly patients. Here we aimed to investigate whether Cernunnos/XLF mutations disrupt the ability of patient cells to respond to replication stress conditions. Our results demonstrate that Cernunnos/XLF mutated cells and cells downregulated for Cernunnos/XLF have increased sensitivity to conditions which perturb DNA replication. In addition, under replication stress, these cells exhibit impaired DSB repair and increased accumulation of cells in G2/M. Moreover Cernunnos/XLF mutated and down regulated cells display greater chromosomal instability, particularly at fragile sites, under replication stress conditions. These results provide evidence for the role of Cernunnos/XLF in repair of DSBs and maintenance of genomic stability under replication stress conditions. This is the first study of a NHEJ syndrome showing association with impaired cellular response to replication stress conditions. These findings may be related to the clinical features in these patients which are not due to the V(D)J recombination defect. Additionally, in light of the emerging important role of replication stress in the early stages of cancer development, our findings may provide a mechanism for the role of NHEJ in preventing tumorigenesis

pH Controlled Impedimetric Sensing of Copper(II) Ion Using Oxytocin as Recognition Element

We report the modulation of the specific metal gation properties of a peptide and demonstrate a highly selective sensor for copper(II) ion. The neuropeptide oxytocin (OT) is reported for its high affinity towards Zn2+ and Cu2+ at physiological pH. The binding of the metal ions to OT is tuned by altering the pH of the medium. OT was self-assembled on glassy carbon electrode using surface chemistry, and electrochemical impedance spectroscopy (EIS) was used to probe the binding of Cu2+. Our results clearly indicate that at pH 10.0, the binding of Cu2+ to OT is increased compared to that at pH 7.0, while the binding to Zn2+ becomes almost negligible. This proves that the selectivity of OT towards each of the ions can be regulated simply by controlling the pH of the medium and hence allows the preparation of a sensing device with selectivity to Cu2+

Living wires — Effects of size and coating of gold nanoparticles in altering the electrical properties of Physarum polycephalum and lettuce seedlings

The manipulation of biological substrates is becoming more popular route toward generating novel computing devices.Physarum polycephalum is used as a model organism in biocomputingbecause it can create "wires" for use in hybrid circuits; programmable growth by manipulation through external stimuli and the ability withstanding a current and its tolerance to hybridization with a variety of nano/microparticles. Lettuce seedlings have also had previous interest invested in them for generating plant wires, although currently there is little information as to their suitability for such applications. In this study both P. polycephalum and Lettuce seedlings were hybridized with gold nanoparticles — functionalized and unfunctionalized — to explore their uptake, toxicological effects and, crucially, any alterations in electrical properties they bestow upon the organisms. Using various microscopy techniques it was shown that P. polycephalum and lettuce seedlings are able to internalize nanoparticles and assemble them in vivo, however some toxicological e®ects were observed. The electrical resistance of both lettuce seedlings and P. polycephalum was found to decrease, the most significant reduction being with lettuce seedlings whose resistance reduced from 3 MOhms to 0.5 MOhms. We conclude that gold is a suitable nanomaterial for biohybridization specifically in creating conductive pathways for more efficient biological wires in self-growing hybrid circuitry

Impedimetric Bacterial Detection Using Random Antimicrobial Peptide Mixtures

The biosensing of bacterial pathogens is of a high priority. Electrochemical biosensors are an important future tool for rapid bacteria detection. A monolayer of bacterial-binding peptides can serve as a recognition layer in such detection devices. Here, we explore the potential of random peptide mixtures (RPMs) composed of phenylalanine and lysine in random sequences and of controlled length, to form a monolayer that can be utilized for sensing. RPMs were found to assemble in a thin and diluted layer that attracts various bacteria. Faradaic electrochemical impedance spectroscopy was used with modified gold electrodes to measure the charge-transfer resistance (RCT) caused due to the binding of bacteria to RPMs. Pseudomonas aeruginosa was found to cause the most prominent increase in RCT compared to other model bacteria. We show that the combination of highly accessible antimicrobial RPMs and electrochemical analysis can be used to generate a new promising line of bacterial biosensors

On Sensing Principles Using Temporally Extended Bar Codes

The detection of ionic variation patterns could be a significant marker for the diagnosis of neurological and other diseases. This paper introduces a novel idea for training chemical sensors to recognise patterns of ionic variations. By using an external voltage signal, a sensor can be trained to output distinct time-series signals depending on the state of the ionic solution. Those sequences can be analysed by a relatively simple readout layer for diagnostic purposes. The idea is demonstrated on a chemical sensor that is sensitive to zinc ions with a simple goal of classifying zinc ionic variations as either stable or varying. The study features both theoretical and experimental results. By extensive numerical simulations, it has been shown that the proposed method works successfully in silico. Distinct time-series signals are found which occur with a high probability under only one class of ionic variations. The related experimental results point in the right direction

Using Photoactive N-Heterocyclic Carbenes Monolayers to Identify the Influence of Surface Proximity on Photoswitching Activity

Self-assembly of photoresponsive molecules is a robust technology for reversibly tuning the chemical and electronic properties of functional materials. In most systems the photoactive group is separated from the surface by a spacer and thus the photo-responsiveness does not benefit from interactions with the metal. Herein, the impact of metal photoactive-group interactions on photoswitchability and surface potential were probed by self-assembly of N-heterocyclic carbene molecules (NHCs) that were functionalized with stilbene group directly on their imidazole ring. Stilbene-NHCs that were adsorbed on weakly interacting Au surface accumulated a vertical orientation, as identified by FTIR measurements. This positioning enabled structural flexibility and high photoisomerization efficiency that induced reversible changes in surface potential. Stilbene-NHCs that were anchored on Pt film accumulated flat-lying adsorption geometry due to strong metal-adsorbate interactions. These interactions limited the structural flexibility of the stilbene groups and induced deteriorated photoswitchability that led to lower photoinduced changes in surface potential. While stronger metal-adsorbate interactions hindered the photo-induced isomerization yield of stilbene, these interactions prompted the cis-to-trans thermal-induced isomerization rate, which was an order of magnitude higher on Pt than on Au. </p